Papers › Understanding convolution on graphs via energies

Understanding convolution on graphs via energies

22 Jun 2022arXiv:2206.10991archive 2025-07-28

Francesco Di Giovanni, James Rowbottom, Benjamin P. Chamberlain, Thomas Markovich, Michael M. Bronstein

Graph Neural Networks (GNNs) typically operate by message-passing, where the state of a node is updated based on the information received from its neighbours. Most message-passing models act as graph convolutions, where features are mixed by a shared, linear transformation before being propagated over the edges. On node-classification tasks, graph convolutions have been shown to suffer from two limitations: poor performance on heterophilic graphs, and over-smoothing. It is common belief that both phenomena occur because such models behave as low-pass filters, meaning that the Dirichlet energy of the features decreases along the layers incurring a smoothing effect that ultimately makes features no longer distinguishable. In this work, we rigorously prove that simple graph-convolutional models can actually enhance high frequencies and even lead to an asymptotic behaviour we refer to as over-sharpening, opposite to over-smoothing. We do so by showing that linear graph convolutions with symmetric weights minimize a multi-particle energy that generalizes the Dirichlet energy; in this setting, the weight matrices induce edge-wise attraction (repulsion) through their positive (negative) eigenvalues, thereby controlling whether the features are being smoothed or sharpened. We also extend the analysis to non-linear GNNs, and demonstrate that some existing time-continuous GNNs are instead always dominated by the low frequencies. Finally, we validate our theoretical findings through ablations and real-world experiments.

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jrowbottomgit/graff officialmentioned in papermentioned on GitHubpytorchApache-2.0 report
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get_optimizer jrowbottomgit/graff/src/run_GNN.py official repository ran · our draft was wrong Apache-2.0 (permissive) · dab3444777a2e6c7 · report
index_to_mask jrowbottomgit/graff/src/heterophilic.py official repository ran · our draft was wrong Apache-2.0 (permissive) · da80a2b9fd449bd2 · report
generate_random_splits jrowbottomgit/graff/src/heterophilic.py official repository unverified Apache-2.0 (permissive) · c20f37114f97e100 · report
get_component jrowbottomgit/graff/src/data.py official repository unverified Apache-2.0 (permissive) · c68140584cc0e991 · report
get_edge_cat jrowbottomgit/graff/src/data_synth_hetero.py official repository unverified Apache-2.0 (permissive) · f8fafdfed1482c4d · report
get_largest_connected_component jrowbottomgit/graff/src/data.py official repository unverified Apache-2.0 (permissive) · b36878b25e3455a3 · report
graff_run_params jrowbottomgit/graff/src/graff_params.py official repository unverified Apache-2.0 (permissive) · add0d5d014f4b500 · report
load_best_params jrowbottomgit/graff/src/graff_params.py official repository unverified Apache-2.0 (permissive) · 910997231dd76428 · report
t_or_f jrowbottomgit/graff/src/graff_params.py official repository unverified Apache-2.0 (permissive) · f9186ef3af509d8c · report

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