Papers › FibeRed: Fiberwise Dimensionality Reduction of Topologically Complex Data with Vector Bundles

FibeRed: Fiberwise Dimensionality Reduction of Topologically Complex Data with Vector Bundles

13 Jun 2022arXiv:2206.06513archive 2025-07-28

Luis Scoccola, Jose A. Perea

Datasets with non-trivial large scale topology can be hard to embed in low-dimensional Euclidean space with existing dimensionality reduction algorithms. We propose to model topologically complex datasets using vector bundles, in such a way that the base space accounts for the large scale topology, while the fibers account for the local geometry. This allows one to reduce the dimensionality of the fibers, while preserving the large scale topology. We formalize this point of view, and, as an application, we describe an algorithm which takes as input a dataset together with an initial representation of it in Euclidean space, assumed to recover part of its large scale topology, and outputs a new representation that integrates local representations, obtained through local linear dimensionality reduction, along the initial global representation. We demonstrate this algorithm on examples coming from dynamical systems and chemistry. In these examples, our algorithm is able to learn topologically faithful embeddings of the data in lower target dimension than various well known metric-based dimensionality reduction algorithms.

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back_substitution_mod LuisScoccola/fibered/src/fibered/linearsystemsmodp.py official repository unverified BSD-3-Clause (permissive) · 23edae15a739d542 · report
geodesicDistance LuisScoccola/fibered/src/fibered/fibred.py official repository unverified BSD-3-Clause (permissive) · 186e05e3a3580d4a · report
getGreedyPerm LuisScoccola/fibered/src/fibered/fibred.py official repository unverified BSD-3-Clause (permissive) · e9aff80678775f7a · report
greedyPermutationCover LuisScoccola/fibered/src/fibered/fibred.py official repository unverified BSD-3-Clause (permissive) · e6dbd179941669e0 · report
ordered_neighbors_dist_mat LuisScoccola/fibered/src/fibered/topologicalobstructions.py official repository unverified BSD-3-Clause (permissive) · 1ebd5b232c6ada88 · report
plot_2d_ LuisScoccola/fibered/src/fibered/plot.py official repository unverified BSD-3-Clause (permissive) · c0901653d25c072b · report

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Dimensionality Reduction

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