Papers › Federated Discrete Denoising Diffusion Model for Molecular Generation with OpenFL

Federated Discrete Denoising Diffusion Model for Molecular Generation with OpenFL

21 Jan 2025arXiv:2501.12523archive 2025-07-28

Kevin Ta, Patrick Foley, Mattson Thieme, Abhishek Pandey, Prashant Shah

Generating unique molecules with biochemically desired properties to serve as viable drug candidates is a difficult task that requires specialized domain expertise. In recent years, diffusion models have shown promising results in accelerating the drug design process through AI-driven molecular generation. However, training these models requires massive amounts of data, which are often isolated in proprietary silos. OpenFL is a federated learning framework that enables privacy-preserving collaborative training across these decentralized data sites. In this work, we present a federated discrete denoising diffusion model that was trained using OpenFL. The federated model achieves comparable performance with a model trained on centralized data when evaluating the uniqueness and validity of the generated molecules. This demonstrates the utility of federated learning in the drug design process. OpenFL is available at: https://github.com/securefederatedai/openfl

PaperPDFCode

Code

securefederatedai/openfl officialmentioned in paperjaxApache-2.0 report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

Not run by Syntology. Nothing on this page verifies that the listed code works.

Tasks

DenoisingDrug DesignFederated LearningPrivacy Preserving

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Diffusion

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections