Papers › Fast 3D registration with accurate optimisation and little learning for Learn2Reg 2021

Fast 3D registration with accurate optimisation and little learning for Learn2Reg 2021

6 Dec 2021arXiv:2112.03053archive 2025-07-28

Hanna Siebert, Lasse Hansen, Mattias P. Heinrich

Current approaches for deformable medical image registration often struggle to fulfill all of the following criteria: versatile applicability, small computation or training times, and the being able to estimate large deformations. Furthermore, end-to-end networks for supervised training of registration often become overly complex and difficult to train. For the Learn2Reg2021 challenge, we aim to address these issues by decoupling feature learning and geometric alignment. First, we introduce a new very fast and accurate optimisation method. By using discretised displacements and a coupled convex optimisation procedure, we are able to robustly cope with large deformations. With the help of an Adam-based instance optimisation, we achieve very accurate registration performances and by using regularisation, we obtain smooth and plausible deformation fields. Second, to be versatile for different registration tasks, we extract hand-crafted features that are modality and contrast invariant and complement them with semantic features from a task-specific segmentation U-Net. With our results we were able to achieve the overall Learn2Reg2021 challenge's second place, winning Task 1 and being second and third in the other two tasks.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2112.03053")

Code

Syntology Ran 0 of 16 code samples harvested from 1 repository linked to this paper; 16 have no recorded run.

By repository: official repository: 16 samples from 1 repository, 0 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

multimodallearning/convexadam officialmentioned in paperpytorchApache-2.0 report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

16 samples harvested; 0 ran; 0 honoured the contract we drafted; 16 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

16unverified

Licence: 0 of the 16 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from multimodallearning/convexadam. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

MINDSSC multimodallearning/convexadam/l2r_2020_convexAdam_CuRIOUS.py official repository unverified Apache-2.0 (permissive) · ccc9566aa49ed5d7 · report
MINDSSC multimodallearning/convexadam/src/convexAdam/convex_adam_utils.py official repository unverified Apache-2.0 (permissive) · 4838aced847d3cea · report
convert_crop_field multimodallearning/convexadam/l2r_2021_convexAdam_task1_docker.py official repository unverified Apache-2.0 (permissive) · 3db9b39d05951b6a · report
correlate multimodallearning/convexadam/l2r_2020_convexAdam_CuRIOUS.py official repository unverified Apache-2.0 (permissive) · d83698a72cf198df · report
correlate multimodallearning/convexadam/l2r_2021_convexAdam_task1_docker.py official repository unverified Apache-2.0 (permissive) · 3c7ef07e48861747 · report
correlate multimodallearning/convexadam/l2r_2021_convexAdam_task2_docker.py official repository unverified Apache-2.0 (permissive) · 3b064d439c7a2fb8 · report
correlate multimodallearning/convexadam/l2r_2021_convexAdam_task3_docker.py official repository unverified Apache-2.0 (permissive) · 961aa20301c69c7b · report
correlate multimodallearning/convexadam/src/convexAdam/convex_adam_utils.py official repository unverified Apache-2.0 (permissive) · d4ec7d6c3baaa400 · report
coupled_convex multimodallearning/convexadam/l2r_2021_convexAdam_task2_docker.py official repository unverified Apache-2.0 (permissive) · 63764cfdaf1d9ade · report
coupled_convex multimodallearning/convexadam/l2r_2021_convexAdam_task3_docker.py official repository unverified Apache-2.0 (permissive) · d4956ef8e3f3ca89 · report
dice_coeff multimodallearning/convexadam/l2r_2021_convexAdam_task3_docker.py official repository unverified Apache-2.0 (permissive) · d1e1ea70000372c4 · report
extract_features multimodallearning/convexadam/src/convexAdam/convex_adam_nnUNet.py official repository unverified Apache-2.0 (permissive) · f3615f69596cbf89 · report
index_translation_to_world_translation multimodallearning/convexadam/src/convexAdam/convex_adam_translation.py official repository unverified Apache-2.0 (permissive) · dca2295d6eb5636c · report
pdist_squared multimodallearning/convexadam/l2r_2020_convexAdam_CuRIOUS.py official repository unverified Apache-2.0 (permissive) · c2f2be4bc9ac6c88 · report
sort_rank multimodallearning/convexadam/self_configuring/convexAdam_hyper_util.py official repository unverified Apache-2.0 (permissive) · beb3ef7be3bbb862 · report
util_kpts_pt multimodallearning/convexadam/l2r_2021_convexAdam_task1_docker.py official repository unverified Apache-2.0 (permissive) · a2632876392a8edc · report

Tasks

Deformable Medical Image RegistrationImage RegistrationMedical Image Registration

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Concatenated Skip ConnectionConvolutionMax PoolingReLUU-Net

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections