Papers › Exploring Graph Tasks with Pure LLMs: A Comprehensive Benchmark and Investigation

Exploring Graph Tasks with Pure LLMs: A Comprehensive Benchmark and Investigation

26 Feb 2025arXiv:2502.18771archive 2025-07-28

Yuxiang Wang, Xinnan Dai, Wenqi Fan, Yao Ma

Graph-structured data has become increasingly prevalent across various domains, raising the demand for effective models to handle graph tasks like node classification and link prediction. Traditional graph learning models like Graph Neural Networks (GNNs) have made significant strides, but their capabilities in handling graph data remain limited in certain contexts. In recent years, large language models (LLMs) have emerged as promising candidates for graph tasks, yet most studies focus primarily on performance benchmarks and fail to address their broader potential, including their ability to handle limited data, their transferability across tasks, and their robustness. In this work, we provide a comprehensive exploration of LLMs applied to graph tasks. We evaluate the performance of pure LLMs, including those without parameter optimization and those fine-tuned with instructions, across various scenarios. Our analysis goes beyond accuracy, assessing LLM ability to perform in few-shot/zero-shot settings, transfer across domains, understand graph structures, and demonstrate robustness in challenging scenarios. We conduct extensive experiments with 16 graph learning models alongside 6 LLMs (e.g., Llama3B, GPT-4o, Qwen-plus), comparing their performance on datasets like Cora, PubMed, ArXiv, and Products. Our findings show that LLMs, particularly those with instruction tuning, outperform traditional models in few-shot settings, exhibit strong domain transferability, and demonstrate excellent generalization and robustness. This work offers valuable insights into the capabilities of LLMs for graph learning, highlighting their advantages and potential for real-world applications, and paving the way for future research in this area. Codes and datasets are released in https://github.com/myflashbarry/LLM-benchmarking.

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evaluate_with_neighbor_loader myflashbarry/LLM-benchmarking/baseline/Arxiv_to_product.py official repository unverified Apache-2.0 (permissive) · fba7d27f4f0b5438 · report
get_completion_from_messages myflashbarry/LLM-benchmarking/LLM/deepseek_V3/deepseek_v3_for_heterophily_node.py official repository unverified Apache-2.0 (permissive) · ce3a0ae50cac1fb8 · report
get_completion_from_messages myflashbarry/LLM-benchmarking/LLM/llama/Llama_Instruct_link.py official repository unverified Apache-2.0 (permissive) · 91d87b3d6bcd5bab · report
get_completion_from_messages myflashbarry/LLM-benchmarking/LLM/qwen/qwen_plus_for_link.py official repository unverified Apache-2.0 (permissive) · a350b1d6962bd121 · report
get_completion_from_messages myflashbarry/LLM-benchmarking/LLM/qwen/qwen_plus_for_node.py official repository unverified Apache-2.0 (permissive) · 51b821d0781ed401 · report
get_data_and_text myflashbarry/LLM-benchmarking/baseline/Arxiv_to_product.py official repository unverified Apache-2.0 (permissive) · 5ee8c70828d72599 · report
mask_features myflashbarry/LLM-benchmarking/baseline/Arxiv_to_cora_graphmae.py official repository unverified Apache-2.0 (permissive) · 3a0569b001641d5a · report
process_combination myflashbarry/LLM-benchmarking/LLM/utils.py official repository unverified Apache-2.0 (permissive) · 8f73d2f2f0fad30d · report
process_combination myflashbarry/LLM-benchmarking/LLM/llama/Llama_Instruct_node.py official repository unverified Apache-2.0 (permissive) · bd51f5433db414b2 · report
random_node_feature_masking myflashbarry/LLM-benchmarking/baseline/GraphCL_link.py official repository unverified Apache-2.0 (permissive) · 4db581253b100901 · report
split_input_text myflashbarry/LLM-benchmarking/LLM/utils.py official repository unverified Apache-2.0 (permissive) · 0feefffe83da0dea · report
split_input_text_link myflashbarry/LLM-benchmarking/LLM/utils.py official repository unverified Apache-2.0 (permissive) · 988ab2719fa85cc9 · report

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BenchmarkingGraph LearningLink PredictionNode Classification

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