Papers › CT Perfusion is All We Need: 4D CNN Segmentation of Penumbra and Core in Patients With...
CT Perfusion is All We Need: 4D CNN Segmentation of Penumbra and Core in Patients With Suspected Ischemic Stroke
Luca Tomasetti, Kjersti Engan, Liv Jorunn Høllesli, Kathinka Dæhli Kurz, Mahdieh Khanmohammadi
Precise and fast prediction methods for ischemic areas comprised of dead tissue, core, and salvageable tissue, penumbra, in acute ischemic stroke (AIS) patients are of significant clinical interest. They play an essential role in improving diagnosis and treatment planning. Computed Tomography (CT) scan is one of the primary modalities for early assessment in patients with suspected AIS. CT Perfusion (CTP) is often used as a primary assessment to determine stroke location, severity, and volume of ischemic lesions. Current automatic segmentation methods for CTP mostly use already processed 3D parametric maps conventionally used for clinical interpretation by radiologists as input. Alternatively, the raw CTP data is used on a slice-by-slice basis as 2D+time input, where the spatial information over the volume is ignored. In addition, these methods are only interested in segmenting core regions, while predicting penumbra can be essential for treatment planning. This paper investigates different methods to utilize the entire 4D CTP as input to fully exploit the spatio-temporal information, leading us to propose a novel 4D convolution layer. Our comprehensive experiments on a local dataset of 152 patients divided into three groups show that our proposed models generate more precise results than other methods explored. Adopting the proposed 4D mJ-Net, a Dice Coefficient of 0.53 and 0.23 is achieved for segmenting penumbra and core areas, respectively. The code is available on https://github.com/Biomedical-Data-Analysis-Laboratory/4D-mJ-Net.git.
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