Papers › EGraFFBench: Evaluation of Equivariant Graph Neural Network Force Fields for Atomistic...

EGraFFBench: Evaluation of Equivariant Graph Neural Network Force Fields for Atomistic Simulations

3 Oct 2023arXiv:2310.02428archive 2025-07-28

Vaibhav Bihani, Utkarsh Pratiush, Sajid Mannan, Tao Du, Zhimin Chen, Santiago Miret, Matthieu Micoulaut, Morten M Smedskjaer, Sayan Ranu, N M Anoop Krishnan

Equivariant graph neural networks force fields (EGraFFs) have shown great promise in modelling complex interactions in atomic systems by exploiting the graphs' inherent symmetries. Recent works have led to a surge in the development of novel architectures that incorporate equivariance-based inductive biases alongside architectural innovations like graph transformers and message passing to model atomic interactions. However, thorough evaluations of these deploying EGraFFs for the downstream task of real-world atomistic simulations, is lacking. To this end, here we perform a systematic benchmarking of 6 EGraFF algorithms (NequIP, Allegro, BOTNet, MACE, Equiformer, TorchMDNet), with the aim of understanding their capabilities and limitations for realistic atomistic simulations. In addition to our thorough evaluation and analysis on eight existing datasets based on the benchmarking literature, we release two new benchmark datasets, propose four new metrics, and three challenging tasks. The new datasets and tasks evaluate the performance of EGraFF to out-of-distribution data, in terms of different crystal structures, temperatures, and new molecules. Interestingly, evaluation of the EGraFF models based on dynamic simulations reveals that having a lower error on energy or force does not guarantee stable or reliable simulation or faithful replication of the atomic structures. Moreover, we find that no model clearly outperforms other models on all datasets and tasks. Importantly, we show that the performance of all the models on out-of-distribution datasets is unreliable, pointing to the need for the development of a foundation model for force fields that can be used in real-world simulations. In summary, this work establishes a rigorous framework for evaluating machine learning force fields in the context of atomic simulations and points to open research challenges within this domain.

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Tasks

Atomic ForcesBenchmarkingFormation EnergyGraph Neural Network

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Formation Energy 3BPA BOTNet MAE 5 #1 of 4 Archive leaderboard report
Formation Energy 3BPA Allegro MAE 4.13 #2 of 4 Archive leaderboard report
Formation Energy 3BPA MACE MAE 4 #3 of 4 Archive leaderboard report
Formation Energy 3BPA NequIP MAE 3.15 #4 of 4 Archive leaderboard report
Formation Energy Acetylacetone BOTNet MAE 2 #1 of 4 Archive leaderboard report
Formation Energy Acetylacetone MACE MAE 2 #2 of 4 Archive leaderboard report
Formation Energy Acetylacetone NequIP MAE 1.38 #3 of 4 Archive leaderboard report
Formation Energy Acetylacetone Allegro MAE 0.92 #4 of 4 Archive leaderboard report
Formation Energy Aspirin Allegro MAE 14.36 #1 of 4 Archive leaderboard report
Formation Energy Aspirin MACE MAE 13.79 #2 of 4 Archive leaderboard report
Formation Energy Aspirin BOTNet MAE 12.63 #3 of 4 Archive leaderboard report
Formation Energy Aspirin NequIP MAE 9.27 #4 of 4 Archive leaderboard report
Formation Energy Ethanol MACE MAE 209.96 #1 of 4 Archive leaderboard report
Formation Energy Ethanol BOTNet MAE 203.83 #2 of 4 Archive leaderboard report
Formation Energy Ethanol Allegro MAE 6.94 #3 of 4 Archive leaderboard report
Formation Energy Ethanol NequIP MAE 4.99 #4 of 4 Archive leaderboard report
Formation Energy GeTe BOTNet MAE 3034 #1 of 4 Archive leaderboard report
Formation Energy GeTe MACE MAE 2670 #2 of 4 Archive leaderboard report
Formation Energy GeTe NequIP MAE 1780.951 #3 of 4 Archive leaderboard report
Formation Energy GeTe Allegro MAE 1009.4 #4 of 4 Archive leaderboard report
Formation Energy LiPS NequIP MAE 165.43 #1 of 4 Archive leaderboard report
Formation Energy LiPS Allegro MAE 31.75 #2 of 4 Archive leaderboard report
Formation Energy LiPS MACE MAE 30 #3 of 4 Archive leaderboard report
Formation Energy LiPS BOTNet MAE 28 #4 of 4 Archive leaderboard report
Formation Energy LiPS20 Allegro MAE 33.17 #1 of 4 Archive leaderboard report
Formation Energy LiPS20 NequIP MAE 26.8 #2 of 4 Archive leaderboard report
Formation Energy LiPS20 BOTNet MAE 24.59 #3 of 4 Archive leaderboard report
Formation Energy LiPS20 MACE MAE 14.05 #4 of 4 Archive leaderboard report
Formation Energy Naphthalene BOTNet MAE 182.55 #1 of 4 Archive leaderboard report
Formation Energy Naphthalene MACE MAE 161.74 #2 of 4 Archive leaderboard report
Formation Energy Naphthalene Allegro MAE 5.82 #3 of 4 Archive leaderboard report
Formation Energy Naphthalene NequIP MAE 2.66 #4 of 4 Archive leaderboard report
Formation Energy Salicylic Acid MACE MAE 165.29 #1 of 4 Archive leaderboard report
Formation Energy Salicylic Acid BOTNet MAE 153.06 #2 of 4 Archive leaderboard report
Formation Energy Salicylic Acid Allegro MAE 8.59 #3 of 4 Archive leaderboard report
Formation Energy Salicylic Acid NequIP MAE 6.29 #4 of 4 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

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