Papers › Efficient Heterogeneous Graph Learning via Random Projection

Efficient Heterogeneous Graph Learning via Random Projection

23 Oct 2023arXiv:2310.14481archive 2025-07-28

Jun Hu, Bryan Hooi, Bingsheng He

Heterogeneous Graph Neural Networks (HGNNs) are powerful tools for deep learning on heterogeneous graphs. Typical HGNNs require repetitive message passing during training, limiting efficiency for large-scale real-world graphs. Recent pre-computation-based HGNNs use one-time message passing to transform a heterogeneous graph into regular-shaped tensors, enabling efficient mini-batch training. Existing pre-computation-based HGNNs can be mainly categorized into two styles, which differ in how much information loss is allowed and efficiency. We propose a hybrid pre-computation-based HGNN, named Random Projection Heterogeneous Graph Neural Network (RpHGNN), which combines the benefits of one style's efficiency with the low information loss of the other style. To achieve efficiency, the main framework of RpHGNN consists of propagate-then-update iterations, where we introduce a Random Projection Squashing step to ensure that complexity increases only linearly. To achieve low information loss, we introduce a Relation-wise Neighbor Collection component with an Even-odd Propagation Scheme, which aims to collect information from neighbors in a finer-grained way. Experimental results indicate that our approach achieves state-of-the-art results on seven small and large benchmark datasets while also being 230% faster compared to the most effective baseline. Surprisingly, our approach not only surpasses pre-processing-based baselines but also outperforms end-to-end methods.

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CrawlScript/RpHGNN officialmentioned in papermentioned on GitHubpytorchGPL-3.0 report

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create_act CrawlScript/RpHGNN/rphgnn/layers/rphgnn_encoder.py official repository ran GPL-3.0 (copyleft) · pointer only · cc601566939bf390 · report
kl_loss CrawlScript/RpHGNN/rphgnn/losses.py official repository ran fingerprinted GPL-3.0 (copyleft) · pointer only · e3c137a431a3a8d8 · report
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dcg_at_k CrawlScript/RpHGNN/rphgnn/utils/metrics_utils.py official repository unverified GPL-3.0 (copyleft) · pointer only · 98dab8054ae3ccee · report
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ndcg_at_k CrawlScript/RpHGNN/rphgnn/utils/metrics_utils.py official repository unverified GPL-3.0 (copyleft) · pointer only · 46e47a2c4cf98c1f · report

Tasks

Graph LearningGraph Neural NetworkHeterogeneous Node ClassificationNode Property Prediction

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Heterogeneous Node Classification ACM (Heterogeneous Node Classification) RpHGNN Macro-F1 94.09 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification ACM (Heterogeneous Node Classification) RpHGNN Micro-F1 94.04 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification DBLP (Heterogeneous Node Classification) RpHGNN Macro-F1 95.23 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification DBLP (Heterogeneous Node Classification) RpHGNN Micro-F1 95.55 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification Freebase (Heterogeneous Node Classification) RpHGNN Macro-F1 54.02 #1 of 9 Archive leaderboard report
Heterogeneous Node Classification Freebase (Heterogeneous Node Classification) RpHGNN Micro-F1 66.55 #1 of 9 Archive leaderboard report
Heterogeneous Node Classification IMDB (Heterogeneous Node Classification) RpHGNN Macro-F1 67.53 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification IMDB (Heterogeneous Node Classification) RpHGNN Micro-F1 69.77 #1 of 11 Archive leaderboard report
Heterogeneous Node Classification OAG-L1-Field RpHGNN MRR 86.79 #1 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-L1-Field RpHGNN NDCG 87.80 #1 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-Venue RpHGNN MRR 35.46 #1 of 5 Archive leaderboard report
Heterogeneous Node Classification OAG-Venue RpHGNN NDCG 53.31 #1 of 5 Archive leaderboard report
Node Property Prediction ogbn-mag RpHGNN+LP+CR (LINE embs) Ext. data No #5 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag RpHGNN+LP+CR (LINE embs) Number of params 7720368 #5 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag RpHGNN+LP+CR (LINE embs) Test Accuracy 0.5773 ± 0.0012 #5 of 39 Archive leaderboard report
Node Property Prediction ogbn-mag RpHGNN+LP+CR (LINE embs) Validation Accuracy 0.5973 ± 0.0008 #5 of 39 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Methods

Graph Neural Network

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