Papers › Efficient graphlet kernels for large graph comparison

Efficient graphlet kernels for large graph comparison

16 Apr 2009Proceedings of the Twelth International Conference on Artificial Intelligence and Statistics 2009 4archive 2025-07-28

Nino Shervashidze, S. V. N. Vishwanathan, Tobias Petri, Kurt Mehlhorn, Karsten Borgwardt.

State-of-the-art graph kernels do not scale to large graphs with hundreds of nodes and thousands of edges. In this article we propose to compare graphs by counting graphlets, i.e., subgraphs with k nodes where k ε {3; 4; 5g}. Exhaustive enumeration of all graphlets being prohibitively expensive, we introduce two theoretically grounded speedup schemes, one based on sampling and the second one specifically designed for bounded degree graphs. In our experimental evaluation, our novel kernels allow us to efficiently compare large graphs that cannot be tackled by existing graph kernels.

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TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Graph Classification PROTEINS GK Accuracy 71.67% #98 of 103 Archive leaderboard report

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