Papers › Efficient and Degree-Guided Graph Generation via Discrete Diffusion Modeling

Efficient and Degree-Guided Graph Generation via Discrete Diffusion Modeling

6 May 2023arXiv:2305.04111archive 2025-07-28

Xiaohui Chen, Jiaxing He, Xu Han, Li-Ping Liu

Diffusion-based generative graph models have been proven effective in generating high-quality small graphs. However, they need to be more scalable for generating large graphs containing thousands of nodes desiring graph statistics. In this work, we propose EDGE, a new diffusion-based generative graph model that addresses generative tasks with large graphs. To improve computation efficiency, we encourage graph sparsity by using a discrete diffusion process that randomly removes edges at each time step and finally obtains an empty graph. EDGE only focuses on a portion of nodes in the graph at each denoising step. It makes much fewer edge predictions than previous diffusion-based models. Moreover, EDGE admits explicitly modeling the node degrees of the graphs, further improving the model performance. The empirical study shows that EDGE is much more efficient than competing methods and can generate large graphs with thousands of nodes. It also outperforms baseline models in generation quality: graphs generated by our approach have more similar graph statistics to those of the training graphs.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2305.04111")

Code

Syntology Ran 7 of 15 code samples harvested from 1 repository linked to this paper; 8 have no recorded run. Of those that ran: 2 ran · honoured contract; 2 ran · our draft was wrong; 3 ran with no contract checked.

By repository: official repository: 15 samples from 1 repository, 7 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

tufts-ml/graph-generation-edge officialmentioned in papermentioned on GitHubpytorchMIT report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

15 samples harvested; 7 ran; 2 honoured the contract we drafted; 8 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

2ran · honoured contract
2ran · our draft was wrong
3ran
8unverified

Licence: 0 of the 15 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from tufts-ml/graph-generation-EDGE. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

dec2bin tufts-ml/graph-generation-EDGE/datasets/data_utils.py official repository ran · our draft was wrong MIT (permissive) · e88509f231bb3519 · report
elbo_nats tufts-ml/graph-generation-EDGE/diffusion/loss.py official repository ran MIT (permissive) · d232e453e386a533 · report
log_1_min_a tufts-ml/graph-generation-EDGE/diffusion/diffusion_base.py official repository ran · honoured contract fingerprinted MIT (permissive) · 479771b269fc5883 · report
log_add_exp tufts-ml/graph-generation-EDGE/diffusion/diffusion_base.py official repository ran · honoured contract fingerprinted MIT (permissive) · 032c0dece6594020 · report
loglik_nats tufts-ml/graph-generation-EDGE/diffusion/loss.py official repository ran MIT (permissive) · 9bff0117086fa0a0 · report
sum_except_batch tufts-ml/graph-generation-EDGE/diffusion/diffusion_base.py official repository ran · our draft was wrong fingerprinted MIT (permissive) · 38d8ef27c0f4b98a · report
time_function tufts-ml/graph-generation-EDGE/eval_utils/evaluation/graph_structure_evaluation.py official repository ran MIT (permissive) · 9dbb5a4e5682531e · report
average_degree tufts-ml/graph-generation-EDGE/eval_utils/graph_statistics.py official repository unverified MIT (permissive) · 01915861e1beb2e7 · report
bin2dec tufts-ml/graph-generation-EDGE/datasets/data_utils.py official repository unverified MIT (permissive) · 0cd35d87234319bf · report
get_data_id tufts-ml/graph-generation-EDGE/datasets/data.py official repository unverified MIT (permissive) · 6d93506952890317 · report
get_model_id tufts-ml/graph-generation-EDGE/model.py official repository unverified MIT (permissive) · cd2cc3898c2d46b1 · report
loglik_bpd tufts-ml/graph-generation-EDGE/diffusion/loss.py official repository unverified MIT (permissive) · d66af0285754f521 · report
max_degree tufts-ml/graph-generation-EDGE/eval_utils/graph_statistics.py official repository unverified MIT (permissive) · 647b90fa4777e970 · report
min_degree tufts-ml/graph-generation-EDGE/eval_utils/graph_statistics.py official repository unverified MIT (permissive) · ff51060ce7b6c1b4 · report
unpack_deg_matrix tufts-ml/graph-generation-EDGE/datasets/data_utils.py official repository unverified MIT (permissive) · b3ebcb1272823098 · report

Tasks

DenoisingGraph Generation

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Diffusion

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections