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ECG Semantic Integrator (ESI): A Foundation ECG Model Pretrained with LLM-Enhanced Cardiological Text

26 May 2024arXiv:2405.19366archive 2025-07-28

Han Yu, Peikun Guo, Akane Sano

The utilization of deep learning on electrocardiogram (ECG) analysis has brought the advanced accuracy and efficiency of cardiac healthcare diagnostics. By leveraging the capabilities of deep learning in semantic understanding, especially in feature extraction and representation learning, this study introduces a new multimodal contrastive pretaining framework that aims to improve the quality and robustness of learned representations of 12-lead ECG signals. Our framework comprises two key components, including Cardio Query Assistant (CQA) and ECG Semantics Integrator(ESI). CQA integrates a retrieval-augmented generation (RAG) pipeline to leverage large language models (LLMs) and external medical knowledge to generate detailed textual descriptions of ECGs. The generated text is enriched with information about demographics and waveform patterns. ESI integrates both contrastive and captioning loss to pretrain ECG encoders for enhanced representations. We validate our approach through various downstream tasks, including arrhythmia detection and ECG-based subject identification. Our experimental results demonstrate substantial improvements over strong baselines in these tasks. These baselines encompass supervised and self-supervised learning methods, as well as prior multimodal pretraining approaches.

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BatchNorm comp-well-org/esi/model/xresnet1d.py official repository ran GPL-3.0 (copyleft) · pointer only · 280ac1abfe484cdc · report
cd_adaptiveconcatpool comp-well-org/esi/model/basic_conv1d.py official repository ran GPL-3.0 (copyleft) · pointer only · 66b10df56ebb7482 · report
default comp-well-org/esi/model/esi.py official repository ran · violated contract fingerprinted GPL-3.0 (copyleft) · pointer only · 60fff7c3c400d7ff · report
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exists comp-well-org/esi/model/esi.py official repository ran · violated contract GPL-3.0 (copyleft) · pointer only · aa5486a3650902d8 · report
get_ecg_loader comp-well-org/esi/utils/ecg_loader.py official repository ran GPL-3.0 (copyleft) · pointer only · 0136c699450036f2 · report
init_default comp-well-org/esi/model/xresnet1d.py official repository ran GPL-3.0 (copyleft) · pointer only · 145e22d624bf52e9 · report
pad_dim_to comp-well-org/esi/model/esi.py official repository ran · our draft was wrong fingerprinted GPL-3.0 (copyleft) · pointer only · d3d5bf1b20109dcd · report
process_arrhythmia comp-well-org/esi/rag/rag_llamaindex.py official repository ran GPL-3.0 (copyleft) · pointer only · 2f2f1bb1b354295f · report
replace_linear comp-well-org/esi/utils/utils.py official repository ran GPL-3.0 (copyleft) · pointer only · d50f37a336cfbd4c · report
tokenize_collate_fn comp-well-org/esi/utils/ecg_loader.py official repository ran GPL-3.0 (copyleft) · pointer only · 42a5fef1553e9926 · report
attrib_adaptiveconcatpool comp-well-org/esi/model/basic_conv1d.py official repository unverified GPL-3.0 (copyleft) · pointer only · 9149d2cbf1cf8d56 · report
freeze_batch_norm_2d comp-well-org/esi/utils/utils.py official repository unverified GPL-3.0 (copyleft) · pointer only · 9b5765523c6d17fd · report
perform_rag comp-well-org/esi/rag/rag_llamaindex.py official repository unverified GPL-3.0 (copyleft) · pointer only · 068031704ecf4d57 · report

Tasks

Arrhythmia DetectionRAGRepresentation LearningRetrieval-augmented GenerationSelf-Supervised Learning

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