Papers › DRew: Dynamically Rewired Message Passing with Delay

DRew: Dynamically Rewired Message Passing with Delay

13 May 2023arXiv:2305.08018archive 2025-07-28

Benjamin Gutteridge, Xiaowen Dong, Michael Bronstein, Francesco Di Giovanni

Message passing neural networks (MPNNs) have been shown to suffer from the phenomenon of over-squashing that causes poor performance for tasks relying on long-range interactions. This can be largely attributed to message passing only occurring locally, over a node's immediate neighbours. Rewiring approaches attempting to make graphs 'more connected', and supposedly better suited to long-range tasks, often lose the inductive bias provided by distance on the graph since they make distant nodes communicate instantly at every layer. In this paper we propose a framework, applicable to any MPNN architecture, that performs a layer-dependent rewiring to ensure gradual densification of the graph. We also propose a delay mechanism that permits skip connections between nodes depending on the layer and their mutual distance. We validate our approach on several long-range tasks and show that it outperforms graph Transformers and multi-hop MPNNs.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2305.08018")

Code

Syntology Ran 2 of 9 code samples harvested from 1 repository linked to this paper; 7 have no recorded run. Of those that ran: 2 ran with no contract checked.

By repository: official repository: 9 samples from 1 repository, 2 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

bengutteridge/drew officialmentioned in papermentioned on GitHubpytorchApache-2.0 report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

9 samples harvested; 2 ran; 0 honoured the contract we drafted; 7 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

2ran
7unverified

Licence: 0 of the 9 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from bengutteridge/drew. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

get_final_pretrained_ckpt bengutteridge/drew/lrgb/graphgps/finetuning.py official repository ran Apache-2.0 (permissive) · 1bb331bf70a78136 · report
init_model_from_pretrained bengutteridge/drew/lrgb/graphgps/finetuning.py official repository ran Apache-2.0 (permissive) · 8653a762bb268420 · report
get_edge_labels bengutteridge/drew/lrgb/graphgps/drew_utils.py official repository unverified Apache-2.0 (permissive) · 55d80bdb901afbfb · report
get_k_neighbourhoods bengutteridge/drew/lrgb/param_calcs.py official repository unverified Apache-2.0 (permissive) · 252ce98ed1b8e82f · report
get_laplacian bengutteridge/drew/lrgb/graphgps/stage/drew_gnn.py official repository unverified Apache-2.0 (permissive) · f81b9780d64581c0 · report
get_num_fc_drew bengutteridge/drew/lrgb/param_calcs.py official repository unverified Apache-2.0 (permissive) · b8ea15638c38ec3c · report
get_run_name bengutteridge/drew/lrgb/graphgps/drew_utils.py official repository unverified Apache-2.0 (permissive) · 8d75472ca0c91c64 · report
load_pretrained_model_cfg bengutteridge/drew/lrgb/graphgps/finetuning.py official repository unverified Apache-2.0 (permissive) · 995500eb98f90144 · report
tonp bengutteridge/drew/lrgb/graphgps/stage/drew_gnn.py official repository unverified Apache-2.0 (permissive) · ca403e2f8771a00f · report

Tasks

Graph ClassificationGraph RegressionInductive BiasLink PredictionNode Classification

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Graph Classification Peptides-func DRew-GCN+LapPE AP 0.7150±0.0044 #9 of 44 Archive leaderboard report
Graph Regression Peptides-struct DRew-GCN+LapPE MAE 0.2536±0.0015 #27 of 39 Archive leaderboard report
Link Prediction PCQM-Contact DRew-GCN MRR 0.3444±0.0017 #15 of 18 Archive leaderboard report
Node Classification PascalVOC-SP DRew-GatedGCN+LapPE macro F1 0.3314±0.0024 #9 of 21 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

Methods

MPNN

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections