Papers › Diffusion-based Conditional ECG Generation with Structured State Space Models

Diffusion-based Conditional ECG Generation with Structured State Space Models

19 Jan 2023arXiv:2301.08227archive 2025-07-28

Juan Miguel Lopez Alcaraz, Nils Strodthoff

Synthetic data generation is a promising solution to address privacy issues with the distribution of sensitive health data. Recently, diffusion models have set new standards for generative models for different data modalities. Also very recently, structured state space models emerged as a powerful modeling paradigm to capture long-term dependencies in time series. We put forward SSSD-ECG, as the combination of these two technologies, for the generation of synthetic 12-lead electrocardiograms conditioned on more than 70 ECG statements. Due to a lack of reliable baselines, we also propose conditional variants of two state-of-the-art unconditional generative models. We thoroughly evaluate the quality of the generated samples, by evaluating pretrained classifiers on the generated data and by evaluating the performance of a classifier trained only on synthetic data, where SSSD-ECG clearly outperforms its GAN-based competitors. We demonstrate the soundness of our approach through further experiments, including conditional class interpolation and a clinical Turing test demonstrating the high quality of the SSSD-ECG samples across a wide range of conditions.

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swish ai4healthuol/sssd-ecg/src/sssd/models/SSSD_ECG.py official repository ran · our draft was wrong fingerprinted MIT (permissive) · 0f786c407fb1ee4c · report
Activation ai4healthuol/sssd-ecg/src/sssd/models/S4Model.py official repository ran · our draft was wrong MIT (permissive) · 89b10a8b26bbb7ed · report
find_max_epoch ai4healthuol/sssd-ecg/src/sssd/utils/util.py official repository ran MIT (permissive) · 745f173f5a730552 · report
flatten ai4healthuol/sssd-ecg/src/sssd/utils/util.py official repository ran MIT (permissive) · c711b513a9afe00d · report
get_initializer ai4healthuol/sssd-ecg/src/sssd/models/S4Model.py official repository ran · our draft was wrong MIT (permissive) · 49d9214ec79a8edb · report
get_logger ai4healthuol/sssd-ecg/src/sssd/models/S4Model.py official repository ran · our draft was wrong MIT (permissive) · 61139ec62260b411 · report
std_normal ai4healthuol/sssd-ecg/src/sssd/utils/util.py official repository ran MIT (permissive) · d3d2b2f127241f47 · report
stratified_subsets ai4healthuol/sssd-ecg/src/ptb_xl/clinical_ts/stratify.py official repository ran · our draft was wrong MIT (permissive) · 3a626a74af8a198b · report
stratify_batched ai4healthuol/sssd-ecg/src/ptb_xl/clinical_ts/stratify.py official repository ran · our draft was wrong fingerprinted MIT (permissive) · 9405c50464b7385f · report
calc_gradient_penalty ai4healthuol/sssd-ecg/src/baselines/utils/utils.py official repository unverified MIT (permissive) · 08bc532c558ef11c · report
generate_four_leads ai4healthuol/sssd-ecg/src/sssd/inference.py official repository unverified MIT (permissive) · 7b4d8ff01c1c340c · report
get_available_channels ai4healthuol/sssd-ecg/src/ptb_xl/clinical_ts/ecg_utils.py official repository unverified MIT (permissive) · e0e92b77185b9c56 · report
get_filename_out ai4healthuol/sssd-ecg/src/ptb_xl/clinical_ts/ecg_utils.py official repository unverified MIT (permissive) · 2bb5c59ccfefe256 · report
split_stratified ai4healthuol/sssd-ecg/src/ptb_xl/clinical_ts/stratify.py official repository unverified MIT (permissive) · e740a0f4139a1c0f · report

Tasks

State Space ModelsSynthetic Data GenerationTime SeriesTime Series Analysis

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Methods

DiffusionTest

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