Papers › Detecting Damped Lyman-α Absorbers with Gaussian Processes

Detecting Damped Lyman-α Absorbers with Gaussian Processes

14 May 2016arXiv:1605.04460links table onlyarchive 2025-07-28

Roman Garnett, Shirley Ho, Simeon Bird, Jeff Schneider

The archive published only this paper's code-link row. Authors, date and abstract are from arXiv's metadata (CC0), read from the Kaggle arXiv metadata snapshot of 2026-09-12 where its title matched the archive's; the title is the archive's.

We develop an automated technique for detecting damped Lyman-α absorbers (DLAs) along spectroscopic lines of sight to quasi-stellar objects (QSOs or quasars). The detection of DLAs in large-scale spectroscopic surveys such as SDSS-III sheds light on galaxy formation at high redshift, showing the nucleation of galaxies from diffuse gas. We use nearly 50 000 QSO spectra to learn a novel tailored Gaussian process model for quasar emission spectra, which we apply to the DLA detection problem via Bayesian model selection. We propose models for identifying an arbitrary number of DLAs along a given line of sight. We demonstrate our method's effectiveness using a large-scale validation experiment, with excellent performance. We also provide a catalog of our results applied to 162 858 spectra from SDSS-III data release 12.

PaperPDFCodeCode Syntology ran

In Syntology View this paper on Syntology: its repositories, every harvested function with whether it ran, its licence and the call to fetch it.

Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="1605.04460")

Code

Syntology Ran 0 of 17 code samples harvested from 2 repositories linked to this paper; 17 have no recorded run.

By repository: official repository: 13 samples from 1 repository, 0 ran; community (archive-listed): 4 samples from 1 repository, 0 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

rmgarnett/gp_dla_detection officialmentioned in papermentioned on GitHubMIT report
jibanCat/desi_gpy_dla_detection mentioned on GitHubMIT report
jibanCat/gpy_dla_detection mentioned on GitHubMIT report
sbird/gp_dla_detection mentioned on GitHubMIT report
yishayv/lyacorr mentioned on GitHubMIT report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

17 samples harvested; 0 ran; 0 honoured the contract we drafted; 17 have no recorded run. Read from Syntology's graph 2026-09-25; that is when this build read the record, not when the samples ran.

17unverified

Licence: 0 of the 17 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from 2 repositories linked to this paper, official or community; each sample names its own and says which. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

Gaussian rmgarnett/gp_dla_detection/CDDF_analysis/voigt.py official repository unverified MIT (permissive) · a57bc207f6ddcefd · report
Lorentzian rmgarnett/gp_dla_detection/CDDF_analysis/voigt.py official repository unverified MIT (permissive) · ea5f29cc0aa083e3 · report
Voigt rmgarnett/gp_dla_detection/CDDF_analysis/voigt.py official repository unverified MIT (permissive) · 8aeede7dbc9a3695 · report
do_MAP_Garnett_comparison rmgarnett/gp_dla_detection/CDDF_analysis/make_multi_dla_plots.py official repository unverified MIT (permissive) · 76072d8283565983 · report
find_pixel_noise rmgarnett/gp_dla_detection/CDDF_analysis/calc_cddf.py official repository unverified MIT (permissive) · 222bf414dd90e625 · report
find_pixel_snr rmgarnett/gp_dla_detection/CDDF_analysis/calc_cddf.py official repository unverified MIT (permissive) · 182da4fc0eea4948 · report
find_snr rmgarnett/gp_dla_detection/CDDF_analysis/calc_cddf.py official repository unverified MIT (permissive) · 1c50a1f41e00583e · report
format_latex_num rmgarnett/gp_dla_detection/CDDF_analysis/make_tables.py official repository unverified MIT (permissive) · ac127482fcea809e · report
format_latex_two_num rmgarnett/gp_dla_detection/CDDF_analysis/make_tables.py official repository unverified MIT (permissive) · a4b05b4034087806 · report
generate_qsos rmgarnett/gp_dla_detection/CDDF_analysis/make_multi_dla_plots.py official repository unverified MIT (permissive) · a7449f1591071b7d · report
generate_qsos_lyseries rmgarnett/gp_dla_detection/CDDF_analysis/make_multi_dla_plots.py official repository unverified MIT (permissive) · d30953e8080cd285 · report
load_table rmgarnett/gp_dla_detection/CDDF_analysis/make_tables.py official repository unverified MIT (permissive) · 64806c35f9a763ad · report
search_index_from_another rmgarnett/gp_dla_detection/CDDF_analysis/qso_loader.py official repository unverified MIT (permissive) · 1565258e3ade9752 · report
downsample_spectrum yishayv/lyacorr/calc_mean_transmittance.py community (archive-listed) unverified MIT (permissive) · 51a17680901e801c · report
fit_function yishayv/lyacorr/continuum_goodness_of_fit.py community (archive-listed) unverified MIT (permissive) · ec69220b26d8f0f7 · report
max_delta_f_per_snr yishayv/lyacorr/continuum_goodness_of_fit.py community (archive-listed) unverified MIT (permissive) · 45246b62a58b5893 · report
rescale yishayv/lyacorr/delta_transmittance_remove_mean.py community (archive-listed) unverified MIT (permissive) · 8f9d07f118f46224 · report

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections