Papers › Deep Coarse-grained Potentials via Relative Entropy Minimization

Deep Coarse-grained Potentials via Relative Entropy Minimization

22 Aug 2022arXiv:2208.10330links table onlyarchive 2025-07-28

Stephan Thaler, Maximilian Stupp, Julija Zavadlav

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Neural network (NN) potentials are a natural choice for coarse-grained (CG) models. Their many-body capacity allows highly accurate approximations of the potential of mean force, promising CG simulations at unprecedented accuracy. CG NN potentials trained bottom-up via force matching (FM), however, suffer from finite data effects: They rely on prior potentials for physically sound predictions outside the training data domain and the corresponding free energy surface is sensitive to errors in transition regions. The standard alternative to FM for classical potentials is relative entropy (RE) minimization, which has not yet been applied to NN potentials. In this work, we demonstrate for benchmark problems of liquid water and alanine dipeptide that RE training is more data efficient due to accessing the CG distribution during training, resulting in improved free energy surfaces and reduced sensitivity to prior potentials. In addition, RE learns to correct time integration errors, allowing larger time steps in CG molecular dynamics simulation while maintaining accuracy. Thus, our findings support the use of training objectives beyond FM as a promising direction for improving CG NN potential accuracy and reliability.

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Jn tummfm/relative-entropy/chemtrain/dimenet_basis_util.py official repository unverified Apache-2.0 (permissive) · 3275ba422c2a789a · report
Jn_zeros tummfm/relative-entropy/chemtrain/dimenet_basis_util.py official repository unverified Apache-2.0 (permissive) · a62e9b4c60eaba14 · report
angle tummfm/relative-entropy/chemtrain/sparse_graph.py official repository unverified Apache-2.0 (permissive) · 973ef5f084c9d299 · report
angle_triplets tummfm/relative-entropy/chemtrain/sparse_graph.py official repository unverified Apache-2.0 (permissive) · e2bbf3cfb16368c0 · report
build_dataset tummfm/relative-entropy/chemtrain/force_matching.py official repository unverified Apache-2.0 (permissive) · b8c0cc579811e6f6 · report
get_dataset tummfm/relative-entropy/chemtrain/data_processing.py official repository unverified Apache-2.0 (permissive) · c463d5ca2b2d5160 · report
init_model tummfm/relative-entropy/chemtrain/force_matching.py official repository unverified Apache-2.0 (permissive) · 3bc3d786ffabbb02 · report
init_traj_mean_fn tummfm/relative-entropy/chemtrain/traj_quantity.py official repository unverified Apache-2.0 (permissive) · 923afb266cef624f · report
model_init_apply tummfm/relative-entropy/chemtrain/dropout.py official repository unverified Apache-2.0 (permissive) · 34b70676af5c11e7 · report
next_dropout_params tummfm/relative-entropy/chemtrain/dropout.py official repository unverified Apache-2.0 (permissive) · d0b26670fee5be6c · report
safe_angle_mask tummfm/relative-entropy/chemtrain/sparse_graph.py official repository unverified Apache-2.0 (permissive) · 56ed90732d1e1c65 · report
spherical_bessel_formulas tummfm/relative-entropy/chemtrain/dimenet_basis_util.py official repository unverified Apache-2.0 (permissive) · dad5a152d86c0b92 · report
split_dropout_params tummfm/relative-entropy/chemtrain/dropout.py official repository unverified Apache-2.0 (permissive) · 1043a41786b732bc · report

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