Papers › D4Explainer: In-Distribution GNN Explanations via Discrete Denoising Diffusion

D4Explainer: In-Distribution GNN Explanations via Discrete Denoising Diffusion

30 Oct 2023arXiv:2310.19321archive 2025-07-28

Jialin Chen, Shirley Wu, Abhijit Gupta, Rex Ying

The widespread deployment of Graph Neural Networks (GNNs) sparks significant interest in their explainability, which plays a vital role in model auditing and ensuring trustworthy graph learning. The objective of GNN explainability is to discern the underlying graph structures that have the most significant impact on model predictions. Ensuring that explanations generated are reliable necessitates consideration of the in-distribution property, particularly due to the vulnerability of GNNs to out-of-distribution data. Unfortunately, prevailing explainability methods tend to constrain the generated explanations to the structure of the original graph, thereby downplaying the significance of the in-distribution property and resulting in explanations that lack reliability. To address these challenges, we propose D4Explainer, a novel approach that provides in-distribution GNN explanations for both counterfactual and model-level explanation scenarios. The proposed D4Explainer incorporates generative graph distribution learning into the optimization objective, which accomplishes two goals: 1) generate a collection of diverse counterfactual graphs that conform to the in-distribution property for a given instance, and 2) identify the most discriminative graph patterns that contribute to a specific class prediction, thus serving as model-level explanations. It is worth mentioning that D4Explainer is the first unified framework that combines both counterfactual and model-level explanations. Empirical evaluations conducted on synthetic and real-world datasets provide compelling evidence of the state-of-the-art performance achieved by D4Explainer in terms of explanation accuracy, faithfulness, diversity, and robustness.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2310.19321")

Code

Syntology Ran 15 of 21 code samples harvested from 1 repository linked to this paper; 6 have no recorded run. Of those that ran: 2 ran · honoured contract; 7 ran · our draft was wrong; 3 ran · fixture could not drive it; 3 ran with no contract checked.

By repository: official repository: 21 samples from 1 repository, 15 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

graph-and-geometric-learning/d4explainer officialmentioned in paperpytorch report
realmoana/proxyexplainer mentioned on GitHubpytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

21 samples harvested; 15 ran; 2 honoured the contract we drafted; 6 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

2ran · honoured contract
7ran · our draft was wrong
3ran · fixture could not drive it
3ran
6unverified

Licence: 0 of the 21 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from graph-and-geometric-learning/d4explainer. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

FeatureExtractor graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · metamorphic tier: deterministic MIT (permissive) · 876af85f8e3ffb2b · report
Powerful graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · metamorphic tier: deterministic MIT (permissive) · 224789a60fc208a5 · report
PowerfulLayer graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · metamorphic tier: deterministic MIT (permissive) · 55f7243fa5953c0d · report
discretenoise_single graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · 6dfdb2f6de8a0f00 · report
gen_full graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · fixture could not drive it MIT (permissive) · a4424d0337fb23aa · report
gen_list_of_data_single graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · fixture could not drive it MIT (permissive) · 2c0b5b94f76fedb0 · report
generate_mask graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · honoured contract MIT (permissive) · d59e27b5fae8a2be · report
gnn_pred graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · c450ff9a010d27ad · report
graph2tensor graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · bad5406d867eff25 · report
loss_cf_exp graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · 6a78eeb85c913ca8 · report
loss_func_bce graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · 63fed087bd0312f9 · report
mask_adjs graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · honoured contract fingerprinted MIT (permissive) · fdd19f4eeaaf2335 · report
masked_instance_norm2D graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · fixture could not drive it MIT (permissive) · e0e84c89f30caaad · report
sparsity graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · 270d02a1f79ddaf1 · report
tensor2graph graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository ran · our draft was wrong MIT (permissive) · c88f152103fd6b98 · report
DiffExplainer graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · c14f6a99b3a0f100 · report
Explainer graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · 4e59a98458bb3be0 · report
e_map_mutag graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · 910c9cb3a669f5b0 · report
graph_to_mol graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · ffae4597c717f872 · report
model_save graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · 52dde03888435cc5 · report
x_map_mutag graph-and-geometric-learning/d4explainer/explainers/diff_explainer.py official repository unverified MIT (permissive) · 8e3e1e254a4e2c8a · report

Tasks

DenoisingGraph Learning

1 archive task tag without a task page not shown.

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections