Papers › Class-Guided Image-to-Image Diffusion: Cell Painting from Brightfield Images with Class Labels

Class-Guided Image-to-Image Diffusion: Cell Painting from Brightfield Images with Class Labels

15 Mar 2023arXiv:2303.08863archive 2025-07-28

Jan Oscar Cross-Zamirski, Praveen Anand, Guy Williams, Elizabeth Mouchet, Yinhai Wang, Carola-Bibiane Schönlieb

Image-to-image reconstruction problems with free or inexpensive metadata in the form of class labels appear often in biological and medical image domains. Existing text-guided or style-transfer image-to-image approaches do not translate to datasets where additional information is provided as discrete classes. We introduce and implement a model which combines image-to-image and class-guided denoising diffusion probabilistic models. We train our model on a real-world dataset of microscopy images used for drug discovery, with and without incorporating metadata labels. By exploring the properties of image-to-image diffusion with relevant labels, we show that class-guided image-to-image diffusion can improve the meaningful content of the reconstructed images and outperform the unguided model in useful downstream tasks.

PaperPDFCodeCode Syntology ran

In Syntology Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2303.08863")

Code

Syntology Ran 12 of 17 code samples harvested from 1 repository linked to this paper; 5 have no recorded run. Of those that ran: 4 ran · honoured contract; 3 ran · our draft was wrong; 1 ran · fixture could not drive it; 4 ran with no contract checked.

By repository: official repository: 17 samples from 1 repository, 12 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

crosszamirski/guided-i2i officialmentioned in papermentioned on GitHubpytorchApache-2.0 report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

17 samples harvested; 12 ran; 4 honoured the contract we drafted; 5 have no recorded run. Read from Syntology's graph 2026-09-24; that is when this build read the record, not when the samples ran.

4ran · honoured contract
3ran · our draft was wrong
1ran · fixture could not drive it
4ran
5unverified

Licence: 0 of the 17 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from crosszamirski/guided-i2i. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

approx_standard_normal_cdf crosszamirski/guided-i2i/guided_diffusion/losses.py official repository ran · our draft was wrong fingerprinted Apache-2.0 (permissive) · cfd76fd0d89574a4 · report
betas_for_alpha_bar crosszamirski/guided-i2i/guided_diffusion/gaussian_diffusion.py official repository ran · honoured contract Apache-2.0 (permissive) · 2ab2316ac6fdd869 · report
discretized_gaussian_log_likelihood crosszamirski/guided-i2i/guided_diffusion/losses.py official repository ran · our draft was wrong Apache-2.0 (permissive) · cd33283d615fb3d7 · report
get_named_beta_schedule crosszamirski/guided-i2i/guided_diffusion/gaussian_diffusion.py official repository ran · honoured contract Apache-2.0 (permissive) · a086d6286a40b889 · report
get_param_groups_and_shapes crosszamirski/guided-i2i/guided_diffusion/fp16_util.py official repository ran Apache-2.0 (permissive) · e41367ad14ff58fd · report
make_master_params crosszamirski/guided-i2i/guided_diffusion/fp16_util.py official repository ran Apache-2.0 (permissive) · e20dd5102da3b050 · report
make_output_format crosszamirski/guided-i2i/guided_diffusion/logger.py official repository ran Apache-2.0 (permissive) · bcd8b4acab199405 · report
normal_kl crosszamirski/guided-i2i/guided_diffusion/losses.py official repository ran · honoured contract fingerprinted Apache-2.0 (permissive) · cf2798b666b231ca · report
parse_resume_step_from_filename crosszamirski/guided-i2i/guided_diffusion/train_util.py official repository ran · honoured contract fingerprinted Apache-2.0 (permissive) · 76313eaf1a6e8f2a · report
space_timesteps crosszamirski/guided-i2i/guided_diffusion/respace.py official repository ran · fixture could not drive it Apache-2.0 (permissive) · 9b6e4e070473e76f · report
unflatten_master_params crosszamirski/guided-i2i/guided_diffusion/fp16_util.py official repository ran Apache-2.0 (permissive) · 64fff1e30802b815 · report
zero_module crosszamirski/guided-i2i/guided_diffusion/nn.py official repository ran · our draft was wrong Apache-2.0 (permissive) · 129b804760b3115f · report
conv_nd crosszamirski/guided-i2i/guided_diffusion/nn.py official repository unverified Apache-2.0 (permissive) · fe4eb545bbb728e0 · report
create_named_schedule_sampler crosszamirski/guided-i2i/guided_diffusion/resample.py official repository unverified Apache-2.0 (permissive) · 1aa1edd33653c7d0 · report
mpi_weighted_mean crosszamirski/guided-i2i/guided_diffusion/logger.py official repository unverified Apache-2.0 (permissive) · e515a67f7f32e76d · report
profile crosszamirski/guided-i2i/guided_diffusion/logger.py official repository unverified Apache-2.0 (permissive) · 0c6607473a4c4c55 · report
scale_module crosszamirski/guided-i2i/guided_diffusion/nn.py official repository unverified Apache-2.0 (permissive) · 9136b5f9b735334b · report

Tasks

DenoisingDrug DiscoveryImage ReconstructionStyle Transfer

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Methods

Diffusion

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections