Papers › CE-Net: Context Encoder Network for 2D Medical Image Segmentation

CE-Net: Context Encoder Network for 2D Medical Image Segmentation

7 Mar 2019arXiv:1903.02740archive 2025-07-28

Zaiwang Gu, Jun Cheng, Huazhu Fu, Kang Zhou, Huaying Hao, Yitian Zhao, Tianyang Zhang, Shenghua Gao, Jiang Liu

Medical image segmentation is an important step in medical image analysis. With the rapid development of convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc segmentation, blood vessel detection, lung segmentation, cell segmentation, etc. Previously, U-net based approaches have been proposed. However, the consecutive pooling and strided convolutional operations lead to the loss of some spatial information. In this paper, we propose a context encoder network (referred to as CE-Net) to capture more high-level information and preserve spatial information for 2D medical image segmentation. CE-Net mainly contains three major components: a feature encoder module, a context extractor and a feature decoder module. We use pretrained ResNet block as the fixed feature extractor. The context extractor module is formed by a newly proposed dense atrous convolution (DAC) block and residual multi-kernel pooling (RMP) block. We applied the proposed CE-Net to different 2D medical image segmentation tasks. Comprehensive results show that the proposed method outperforms the original U-Net method and other state-of-the-art methods for optic disc segmentation, vessel detection, lung segmentation, cell contour segmentation and retinal optical coherence tomography layer segmentation.

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Guzaiwang/CE-Net officialmentioned in papermentioned on GitHubpytorch report
HzFu/MNet_DeepCDR mentioned on GitHubtf report

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Tasks

Cell SegmentationDecoderImage SegmentationMedical Image AnalysisMedical Image SegmentationOptic Disc SegmentationSegmentationSemantic SegmentationVessel Detection

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Lung Nodule Segmentation LUNA CE-Net Accuracy 0.99 #4 of 5 Archive leaderboard report
Medical Image Segmentation ISBI 2012 EM Segmentation CE-Net VInfo 0.9878 #2 of 3 Archive leaderboard report
Medical Image Segmentation ISBI 2012 EM Segmentation CE-Net VRand 0.9743 #2 of 3 Archive leaderboard report
Retinal Vessel Segmentation DRIVE CE-Net AUC 0.9779 #15 of 22 Archive leaderboard report
Retinal Vessel Segmentation DRIVE CE-Net Accuracy 0.9545 #15 of 22 Archive leaderboard report
Retinal Vessel Segmentation ROSE-1 DVC CE-Net Dice Score 57.83 #5 of 5 Archive leaderboard report
Retinal Vessel Segmentation ROSE-1 SVC CE-Net Dice Score 75.11 #3 of 5 Archive leaderboard report
Retinal Vessel Segmentation ROSE-1 SVC-DVC CE-Net Dice Score 73.00 #4 of 5 Archive leaderboard report
Retinal Vessel Segmentation ROSE-2 CE-Net Dice Score 70.66 #3 of 5 Archive leaderboard report

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Methods

1x1 ConvolutionAverage PoolingBatch NormalizationBottleneck Residual BlockConcatenated Skip ConnectionConvolutionGlobal Average PoolingKaiming InitializationMax PoolingReLUResidual BlockResidual ConnectionU-Net

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