Papers › Causal Learning in Biomedical Applications: A Benchmark

Causal Learning in Biomedical Applications: A Benchmark

21 Jun 2024arXiv:2406.15189archive 2025-07-28

Petr Ryšavý, Xiaoyu He, Jakub Mareček

Learning causal relationships between a set of variables is a challenging problem in computer science. Many existing artificial benchmark datasets are based on sampling from causal models and thus contain residual information that the R ²-sortability can identify. Here, we present a benchmark for methods in causal learning using time series. The presented dataset is not R²-sortable and is based on a real-world scenario of the Krebs cycle that is used in cells to release energy. We provide four scenarios of learning, including short and long time series, and provide guidance so that testing is unified between possible users.

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