Papers › An Investigation of Recurrent Neural Architectures for Drug Name Recognition

An Investigation of Recurrent Neural Architectures for Drug Name Recognition

24 Sep 2016WS 2016 11arXiv:1609.07585archive 2025-07-28

Raghavendra Chalapathy, Ehsan Zare Borzeshi, Massimo Piccardi

Drug name recognition (DNR) is an essential step in the Pharmacovigilance (PV) pipeline. DNR aims to find drug name mentions in unstructured biomedical texts and classify them into predefined categories. State-of-the-art DNR approaches heavily rely on hand crafted features and domain specific resources which are difficult to collect and tune. For this reason, this paper investigates the effectiveness of contemporary recurrent neural architectures - the Elman and Jordan networks and the bidirectional LSTM with CRF decoding - at performing DNR straight from the text. The experimental results achieved on the authoritative SemEval-2013 Task 9.1 benchmarks show that the bidirectional LSTM-CRF ranks closely to highly-dedicated, hand-crafted systems.

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Pharmacovigilance

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CRFLSTMSigmoid ActivationTanh Activation

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