Papers › ABodyBuilder3: Improved and scalable antibody structure predictions

ABodyBuilder3: Improved and scalable antibody structure predictions

31 May 2024arXiv:2405.20863archive 2025-07-28

Henry Kenlay, Frédéric A. Dreyer, Daniel Cutting, Daniel Nissley, Charlotte M. Deane

Accurate prediction of antibody structure is a central task in the design and development of monoclonal antibodies, notably to understand both their developability and their binding properties. In this article, we introduce ABodyBuilder3, an improved and scalable antibody structure prediction model based on ImmuneBuilder. We achieve a new state-of-the-art accuracy in the modelling of CDR loops by leveraging language model embeddings, and show how predicted structures can be further improved through careful relaxation strategies. Finally, we incorporate a predicted Local Distance Difference Test into the model output to allow for a more accurate estimation of uncertainties.

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Language ModelingLanguage ModellingPrediction

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