Papers › A Theoretical Formulation of Many-body Message Passing Neural Networks

A Theoretical Formulation of Many-body Message Passing Neural Networks

16 Jul 2024arXiv:2407.11756archive 2025-07-28

Jiatong Han

We present many-body Message Passing Neural Network (MPNN) framework that models higher-order node interactions (≥2 nodes). We model higher-order terms as tree-shaped motifs, comprising a central node with its neighborhood, and apply localized spectral filters on motif Laplacian, weighted by global edge Ricci curvatures. We prove our formulation is invariant to neighbor node permutation, derive its sensitivity bound, and bound the range of learned graph potential. We run regression on graph energies to demonstrate that it scales well with deeper and wider network topology, and run classification on synthetic graph datasets with heterophily and show its consistently high Dirichlet energy growth. We open-source our code at https://github.com/JThh/Many-Body-MPNN.

PaperPDFCodeCode Syntology ran

In Syntology View this paper on Syntology: its repositories, every harvested function with whether it ran, its licence and the call to fetch it.

Open this paper in Syntology's Atlas, the map of the papers in Syntology's graph and their citations.

For agents, Syntology's MCP tool lists every function and class Syntology harvested from this paper and whether it ran (how to connect): get_harvested_code_for_paper(arxiv_id="2407.11756")

Code

Syntology Ran 1 of 4 code samples harvested from 1 repository linked to this paper; 3 have no recorded run. Of those that ran: 1 ran with no contract checked.

By repository: official repository: 4 samples from 1 repository, 1 ran. The run record, sample by sample. “Ran” means executed on a synthesized input, not that the code is correct or reproduces the paper.

jthh/many-body-mpnn officialmentioned in paperpytorch report

Repository list and official/mentioned flags are the archive's, frozen 2025-07-28. Reachability, where shown, is from one Syntology probe window (2026-09-16 to 2026-09-18); repositories not probed show nothing. GitHub stars are not tracked.

Code Syntology ran Syntology

4 samples harvested; 1 ran; 0 honoured the contract we drafted; 3 have no recorded run. Read from Syntology's graph 2026-09-25; that is when this build read the record, not when the samples ran.

1ran
3unverified

Licence: 4 of the 4 samples are pointer only, meaning Syntology does not serve that copy's text. This page shows no code text for any sample; each one links to its file in the repository.

Harvested from jthh/many-body-mpnn. “Ran” means the sample executed on a synthesized input. It does not mean the output is correct, and nothing here reproduces the paper's results. “Honoured” and “violated” refer to a contract Syntology drafted from the code itself; “our draft was wrong” and “fixture could not drive it” are failures of Syntology's instrument, not of the code.

Each sample ends with its code_sha256, Syntology's identity for that exact code. An agent fetches the stored sample with Syntology's MCP tool get_code(code_sha256="…") (how to connect); click an identity to copy that call.

Repository labels, per sample. official repository: The archive marks this repository official for the paper. named in the paper: The archive records that the paper mentions this repository; it is not marked official. community (archive-listed): In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper. found in paper text by Syntology: Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted. community: Not in the archive's code links for this paper; a community repository Syntology harvested. Samples from a repository marked official are listed first. Licence labels name the repository's licence as recorded at harvest. “Pointer only” means Syntology does not serve that copy's text, for one of four reasons: no licence file was found; the licence was not identified; the licence is recorded as permissive but that copy's record is not marked cleared; or the licence is outside the permissive list Syntology serves text under (MIT, Apache-2.0, BSD and similar). Some licences outside that list permit redistribution, such as WTFPL, and GPL-3.0 under its conditions; they are simply not on the list. Hover a licence label for the reason. File links open the file on GitHub at the default branch, which may have changed since the harvest.

compute_loss jthh/many-body-mpnn/utils.py official repository ran fingerprinted no licence file found · pointer only · 85f5e308f40e82df · report
evaluate jthh/many-body-mpnn/utils.py official repository unverified no licence file found · pointer only · 0cc26e3d0c7cfdb6 · report
load_zinc_dataset_subset jthh/many-body-mpnn/datasets.py official repository unverified no licence file found · pointer only · d1b77dba28462fd2 · report
train jthh/many-body-mpnn/utils.py official repository unverified no licence file found · pointer only · 4dd698b1c78ec59a · report

Tasks

Sensitivity

Results from the paper archive 2025-07-28

No leaderboard rows for this paper in the archive.

Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections