Papers › An In-Depth Evaluation of Federated Learning on Biomedical Natural Language Processing

An In-Depth Evaluation of Federated Learning on Biomedical Natural Language Processing

20 Jul 2023arXiv:2307.11254archive 2025-07-28

Le Peng, Gaoxiang Luo, Sicheng Zhou, jiandong chen, Rui Zhang, Ziyue Xu, Ju Sun

Language models (LMs) such as BERT and GPT have revolutionized natural language processing (NLP). However, the medical field faces challenges in training LMs due to limited data access and privacy constraints imposed by regulations like the Health Insurance Portability and Accountability Act (HIPPA) and the General Data Protection Regulation (GDPR). Federated learning (FL) offers a decentralized solution that enables collaborative learning while ensuring data privacy. In this study, we evaluated FL on 2 biomedical NLP tasks encompassing 8 corpora using 6 LMs. Our results show that: 1) FL models consistently outperformed models trained on individual clients' data and sometimes performed comparably with models trained with polled data; 2) with the fixed number of total data, FL models training with more clients produced inferior performance but pre-trained transformer-based models exhibited great resilience. 3) FL models significantly outperformed large language models using zero-/one-shot learning and offered lightning inference speed.

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gaoxiangluo/llm-biomed-ner-er officialmentioned in paper report
pl97/fednlp officialmentioned in paperpytorch report

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Federated LearningOne-Shot Learning

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AdamAttentionAttention DropoutBERTBPECosine AnnealingDense ConnectionsDiscriminative Fine-TuningDropoutGPTLayer NormalizationLinear LayerLinear Warmup With Cosine AnnealingLinear Warmup With Linear DecayMulti-Head AttentionResidual ConnectionSoftmaxWeight DecayWordPiece

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