Papers › A Self-feedback Knowledge Elicitation Approach for Chemical Reaction Predictions

A Self-feedback Knowledge Elicitation Approach for Chemical Reaction Predictions

15 Apr 2024arXiv:2404.09606archive 2025-07-28

PengFei Liu, Jun Tao, Zhixiang Ren

The task of chemical reaction predictions (CRPs) plays a pivotal role in advancing drug discovery and material science. However, its effectiveness is constrained by the vast and uncertain chemical reaction space and challenges in capturing reaction selectivity, particularly due to existing methods' limitations in exploiting the data's inherent knowledge. To address these challenges, we introduce a data-curated self-feedback knowledge elicitation approach. This method starts from iterative optimization of molecular representations and facilitates the extraction of knowledge on chemical reaction types (RTs). Then, we employ adaptive prompt learning to infuse the prior knowledge into the large language model (LLM). As a result, we achieve significant enhancements: a 14.2% increase in retrosynthesis prediction accuracy, a 74.2% rise in reagent prediction accuracy, and an expansion in the model's capability for handling multi-task chemical reactions. This research offers a novel paradigm for knowledge elicitation in scientific research and showcases the untapped potential of LLMs in CRPs.

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ai-hpc-research-team/slm4crp officialmentioned in papermentioned on GitHubpytorch report

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Tasks

Chemical Reaction PredictionDrug DiscoveryForward reaction predictionLanguage ModelingLanguage ModellingLarge Language ModelPrompt LearningReagent PredictionRetrosynthesis

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Chemical Reaction Prediction Mol-Instruction SLM4CRP Exact 0.674 #1 of 1 Archive leaderboard report
Chemical Reaction Prediction Mol-Instruction SLM4CRP METEOR 0.901 #1 of 1 Archive leaderboard report
Chemical Reaction Prediction Mol-Instruction SLM4CRP Morgan FTS 0.854 #1 of 1 Archive leaderboard report
Chemical Reaction Prediction Mol-Instruction SLM4CRP Validity 0.998 #1 of 1 Archive leaderboard report
Forward reaction prediction Mol-Instruction SLM4CRP Exact 0.945 #1 of 2 Archive leaderboard report
Forward reaction prediction Mol-Instruction SLM4CRP METEOR 0.993 #1 of 2 Archive leaderboard report
Forward reaction prediction Mol-Instruction SLM4CRP Morgan FTS 0.986 #1 of 2 Archive leaderboard report
Forward reaction prediction Mol-Instruction SLM4CRP Validity 0.997 #1 of 2 Archive leaderboard report
Reagent Prediction Mol-Instruction SLM4CRP Exact 0.284 #1 of 2 Archive leaderboard report
Reagent Prediction Mol-Instruction SLM4CRP METEOR 0.744 #1 of 2 Archive leaderboard report
Reagent Prediction Mol-Instruction SLM4CRP Morgan FTS 0.649 #1 of 2 Archive leaderboard report
Reagent Prediction Mol-Instruction SLM4CRP Validity 1 #1 of 2 Archive leaderboard report
Retrosynthesis Mol-Instruction SLM4CRP Exact 0.757 #1 of 2 Archive leaderboard report
Retrosynthesis Mol-Instruction SLM4CRP METEOR 0.95 #1 of 2 Archive leaderboard report
Retrosynthesis Mol-Instruction SLM4CRP Morgan FTS 0.905 #1 of 2 Archive leaderboard report
Retrosynthesis Mol-Instruction SLM4CRP Validity 0.994 #1 of 2 Archive leaderboard report

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