Papers › A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation

A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation

14 Jun 2019arXiv:1906.06148archive 2025-07-28

Robin Brügger, Christian F. Baumgartner, Ender Konukoglu

One of the key drawbacks of 3D convolutional neural networks for segmentation is their memory footprint, which necessitates compromises in the network architecture in order to fit into a given memory budget. Motivated by the RevNet for image classification, we propose a partially reversible U-Net architecture that reduces memory consumption substantially. The reversible architecture allows us to exactly recover each layer's outputs from the subsequent layer's ones, eliminating the need to store activations for backpropagation. This alleviates the biggest memory bottleneck and enables very deep (theoretically infinitely deep) 3D architectures. On the BraTS challenge dataset, we demonstrate substantial memory savings. We further show that the freed memory can be used for processing the whole field-of-view (FOV) instead of patches. Increasing network depth led to higher segmentation accuracy while growing the memory footprint only by a very small fraction, thanks to the partially reversible architecture.

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RobinBruegger/PartiallyReversibleUnet officialmentioned in papermentioned on GitHubpytorchBSD-3-Clause report
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convert_to_onehot RobinBruegger/PartiallyReversibleUnet/dataProcessing/utils.py official repository unverified BSD-3-Clause (permissive) · 655b6c41d66f6e08 · report
cropToSize RobinBruegger/PartiallyReversibleUnet/dataProcessing/augmentation.py official repository unverified BSD-3-Clause (permissive) · 490170484880eb83 · report
crop_volume_allDim RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_data_loader.py official repository unverified BSD-3-Clause (permissive) · 6bdbaa82995e50da · report
crop_volume_allDim RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_validation_data_loader.py official repository unverified BSD-3-Clause (permissive) · a4685fdb16dd025a · report
dice RobinBruegger/PartiallyReversibleUnet/bratsUtils.py official repository unverified BSD-3-Clause (permissive) · bc6738cdc2e9cdac · report
diceLoss RobinBruegger/PartiallyReversibleUnet/bratsUtils.py official repository unverified BSD-3-Clause (permissive) · ad0498c6f103c936 · report
getChannelsAtIndex RobinBruegger/PartiallyReversibleUnet/experiments/noNewReversible.py official repository unverified BSD-3-Clause (permissive) · cfad01770826b0d7 · report
ncc RobinBruegger/PartiallyReversibleUnet/dataProcessing/utils.py official repository unverified BSD-3-Clause (permissive) · 64238175a9a6b6ce · report
norm_l2 RobinBruegger/PartiallyReversibleUnet/dataProcessing/utils.py official repository unverified BSD-3-Clause (permissive) · 40982e09ede903ad · report
normalise_image RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_data_loader.py official repository unverified BSD-3-Clause (permissive) · 9146f30cacc79517 · report
normalise_image RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_validation_data_loader.py official repository unverified BSD-3-Clause (permissive) · 796feb0e31cfb904 · report
padToSize RobinBruegger/PartiallyReversibleUnet/dataProcessing/augmentation.py official repository unverified BSD-3-Clause (permissive) · abd3eebccec9f78b · report
softDice RobinBruegger/PartiallyReversibleUnet/bratsUtils.py official repository unverified BSD-3-Clause (permissive) · 3b9462f9056ee95e · report
test_train_val_split RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_data_loader.py official repository unverified BSD-3-Clause (permissive) · 407af86815254b44 · report
test_train_val_split RobinBruegger/PartiallyReversibleUnet/dataProcessing/brats18_validation_data_loader.py official repository unverified BSD-3-Clause (permissive) · ea35d2f3d8516236 · report

Tasks

Image ClassificationImage SegmentationMedical Image SegmentationSegmentationSemantic Segmentationimage-classification

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Concatenated Skip ConnectionMax PoolingReLUU-Net

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