Papers › A Comprehensive Study on Large-Scale Graph Training: Benchmarking and Rethinking

A Comprehensive Study on Large-Scale Graph Training: Benchmarking and Rethinking

14 Oct 2022arXiv:2210.07494archive 2025-07-28

Keyu Duan, Zirui Liu, Peihao Wang, Wenqing Zheng, Kaixiong Zhou, Tianlong Chen, Xia Hu, Zhangyang Wang

Large-scale graph training is a notoriously challenging problem for graph neural networks (GNNs). Due to the nature of evolving graph structures into the training process, vanilla GNNs usually fail to scale up, limited by the GPU memory space. Up to now, though numerous scalable GNN architectures have been proposed, we still lack a comprehensive survey and fair benchmark of this reservoir to find the rationale for designing scalable GNNs. To this end, we first systematically formulate the representative methods of large-scale graph training into several branches and further establish a fair and consistent benchmark for them by a greedy hyperparameter searching. In addition, regarding efficiency, we theoretically evaluate the time and space complexity of various branches and empirically compare them w.r.t GPU memory usage, throughput, and convergence. Furthermore, We analyze the pros and cons for various branches of scalable GNNs and then present a new ensembling training manner, named EnGCN, to address the existing issues. Our code is available at https://github.com/VITA-Group/Large_Scale_GCN_Benchmarking.

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vita-group/large_scale_gcn_benchmarking officialmentioned in papermentioned on GitHubpytorchMIT report
VITA-Group/Large_Scale_GCN_Benchmarking mentioned on GitHubpytorchMIT report

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GroupMLP vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository ran · metamorphic tier: deterministic MIT (permissive) · d45179a8ecfc96ae · report
Inner_MLP vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository ran · metamorphic tier: deterministic MIT (permissive) · 7d40a14acc3d3bc1 · report
MultiHeadBatchNorm vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository ran · metamorphic tier: deterministic MIT (permissive) · ad4bc3f7c6b618ae · report
MultiHeadLinear vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository ran · metamorphic tier: deterministic fingerprinted MIT (permissive) · 65a60ee7108c1fdf · report
EnGCN vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository unverified MIT (permissive) · 1ec1bebe869a1715 · report
MLP_SLE vita-group/large_scale_gcn_benchmarking/Precomputing/Ensembling/EnGCN.py official repository unverified MIT (permissive) · 55b2bb5254c64562 · report

Tasks

BenchmarkingNode ClassificationNode Property Prediction

1 archive task tag without a task page not shown.

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Node Classification Flickr EnGCN (Duan et al., 2022) Accuracy 0.562 #4 of 8 Archive leaderboard report
Node Classification Reddit EnGCN Accuracy 96.65% #7 of 16 Archive leaderboard report
Node Property Prediction ogbn-products EnGCN Ext. data No #2 of 64 Archive leaderboard report
Node Property Prediction ogbn-products EnGCN Number of params 653918 #2 of 64 Archive leaderboard report
Node Property Prediction ogbn-products EnGCN Test Accuracy 0.8798 ± 0.0004 #2 of 64 Archive leaderboard report
Node Property Prediction ogbn-products EnGCN Validation Accuracy 0.9241 ± 0.0003 #2 of 64 Archive leaderboard report

Ranks are positions in the archive's leaderboards as they stood at the 2025-07-28 snapshot. Results published since then are not among these rows, so a rank here is not a current standing.

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