Papers › A Comprehensive Study on Colorectal Polyp Segmentation with ResUNet++, Conditional...

A Comprehensive Study on Colorectal Polyp Segmentation with ResUNet++, Conditional Random Field and Test-Time Augmentation

26 Jul 2021arXiv:2107.12435archive 2025-07-28

Debesh Jha, Pia H. Smedsrud, Dag Johansen, Thomas de Lange, Håvard D. Johansen, Pål Halvorsen, Michael A. Riegler

Colonoscopy is considered the gold standard for detection of colorectal cancer and its precursors. Existing examination methods are, however, hampered by high overall miss-rate, and many abnormalities are left undetected. Computer-Aided Diagnosis systems based on advanced machine learning algorithms are touted as a game-changer that can identify regions in the colon overlooked by the physicians during endoscopic examinations, and help detect and characterize lesions. In previous work, we have proposed the ResUNet++ architecture and demonstrated that it produces more efficient results compared with its counterparts U-Net and ResUNet. In this paper, we demonstrate that further improvements to the overall prediction performance of the ResUNet++ architecture can be achieved by using conditional random field and test-time augmentation. We have performed extensive evaluations and validated the improvements using six publicly available datasets: Kvasir-SEG, CVC-ClinicDB, CVC-ColonDB, ETIS-Larib Polyp DB, ASU-Mayo Clinic Colonoscopy Video Database, and CVC-VideoClinicDB. Moreover, we compare our proposed architecture and resulting model with other State-of-the-art methods. To explore the generalization capability of ResUNet++ on different publicly available polyp datasets, so that it could be used in a real-world setting, we performed an extensive cross-dataset evaluation. The experimental results show that applying CRF and TTA improves the performance on various polyp segmentation datasets both on the same dataset and cross-dataset.

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Code

DebeshJha/ResUNet-with-CRF-and-TTA officialmentioned in papertf report

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Tasks

Medical Image Segmentation

Results from the paper archive 2025-07-28

TaskDatasetModelMetricValueRank at snapshotLeaderboardReport
Medical Image Segmentation CVC-ClinicDB ResUNet++ + TTA mean Dice 0.9020 #42 of 48 Archive leaderboard report
Medical Image Segmentation CVC-ClinicDB ResUNet++ + CRF+ TTA mean Dice 0.9017 #43 of 48 Archive leaderboard report
Medical Image Segmentation CVC-ColonDB ResUNet++ + TTA mIoU 0.8466 #8 of 25 Archive leaderboard report
Medical Image Segmentation CVC-ColonDB ResUNet++ + TTA mean Dice 0.8474 #8 of 25 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA Dice 0.8125 #1 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA Recall 0.6896 #1 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA mIoU 0.8467 #1 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA precision 0.6421 #1 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA + CRF Dice 0.8130 #2 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA + CRF Recall 0.6875 #2 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA + CRF mIoU 0.8477 #2 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + TTA + CRF precision 0.6276 #2 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + CRF Dice 0.8811 #4 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + CRF Recall 0.7743 #4 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + CRF mIoU 0.8739 #4 of 5 Archive leaderboard report
Medical Image Segmentation CVC-VideoClinicDB ResUNet++ + CRF precision 0.6706 #4 of 5 Archive leaderboard report
Medical Image Segmentation ETIS-LARIBPOLYPDB ResUNet++ + TTA mIoU 0.7458 #25 of 25 Archive leaderboard report
Medical Image Segmentation ETIS-LARIBPOLYPDB ResUNet++ + TTA mean Dice 0.6136 #25 of 25 Archive leaderboard report
Medical Image Segmentation Kvasir-SEG ResUNet++ + TTA + CRF FPS 69.59 #52 of 58 Archive leaderboard report
Medical Image Segmentation Kvasir-SEG ResUNet++ + TTA + CRF mIoU 0.7800 #52 of 58 Archive leaderboard report
Medical Image Segmentation Kvasir-SEG ResUNet++ + TTA + CRF mean Dice 0.8508 #52 of 58 Archive leaderboard report

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Methods

CRFConcatenated Skip ConnectionConvolutionMax PoolingReLUU-Net

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