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Scalable Evaluation and Improvement of Document Set Expansion via Neural Positive-Unlabeled Learning

29 Oct 2019EACL 2021 2arXiv:1910.13339archive 2025-07-28

Alon Jacovi, Gang Niu, Yoav Goldberg, Masashi Sugiyama

We consider the situation in which a user has collected a small set of documents on a cohesive topic, and they want to retrieve additional documents on this topic from a large collection. Information Retrieval (IR) solutions treat the document set as a query, and look for similar documents in the collection. We propose to extend the IR approach by treating the problem as an instance of positive-unlabeled (PU) learning -- i.e., learning binary classifiers from only positive and unlabeled data, where the positive data corresponds to the query documents, and the unlabeled data is the results returned by the IR engine. Utilizing PU learning for text with big neural networks is a largely unexplored field. We discuss various challenges in applying PU learning to the setting, including an unknown class prior, extremely imbalanced data and large-scale accurate evaluation of models, and we propose solutions and empirically validate them. We demonstrate the effectiveness of the method using a series of experiments of retrieving PubMed abstracts adhering to fine-grained topics. We demonstrate improvements over the base IR solution and other baselines.

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build_es_pubmed_index sayaendo/document-set-expansion-pu/dse/elasticsearch_dse/build_pubmed_es_index.py official repository unverified MIT (permissive) · 060d70acb9256ec4 · report
get_articles_data_from_pubmed_xml sayaendo/document-set-expansion-pu/dse/elasticsearch_dse/build_pubmed_es_index.py official repository unverified MIT (permissive) · 83b0aa4bbdaf59af · report
get_conjunction_match_query sayaendo/document-set-expansion-pu/dse/elasticsearch_dse/query_pubmed_es_index.py official repository unverified MIT (permissive) · 81bce780340bfc9f · report
get_mlt_query sayaendo/document-set-expansion-pu/dse/elasticsearch_dse/query_pubmed_es_index.py official repository unverified MIT (permissive) · 22c29d375285840e · report
get_pmid_query sayaendo/document-set-expansion-pu/dse/elasticsearch_dse/query_pubmed_es_index.py official repository unverified MIT (permissive) · 86bd3996a9e575cf · report

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