Methods › Graphs › Graph Embeddings › Laplacian PE › Papers where code ran, page 1
Laplacian Positional Encodings
Laplacian PE
Papers archive 2025-07-28
archive papers tagged: 296 · with a code link: 154 · where Syntology ran a sample: 53 (46 with a run with no instrument failure, 7 where every run was a failure of Syntology's instrument) Syntology
Show: all tagged papersonly where code ran (53 of 296 tagged: 46 with a run with no instrument failure, 7 where every run was a failure of Syntology's instrument)
Syntology We ran code from the paper's repository; we did not isolate this method inside it.
Page 1 of 1: papers 1 to 53 of the 53 tagged papers where Syntology ran at least one harvested sample (46 with a run with no instrument failure, 7 where every run was a failure of Syntology's instrument), newest first by the archive's date (ties by arXiv id). This is a filter on Syntology's record ordered by date only, not a ranking; a run is not a correctness claim. A paper missing from this list is not a recorded non-run: it may have no arXiv id, no harvested code, or only samples that have not run yet.
Repository counts are the archive's code-links table. A Syntology line states what Syntology ran from that paper's harvested code, as “N ran (of which C constructed an object rather than computing a result; K with no instrument failure: H honoured, V violated, P with no contract checked; I where Syntology's instrument failed) · U unverified”; the instrument figure counts failures of Syntology's instrument, not of the code. It is per sample and not a correctness claim. When the archive marks a repository official for the paper, the line starts with that repository's state (the archive's flag, not a verdict on who wrote the code; “community repositories only” when every sample that ran came from a community repository, “official: no sample here; runs from other or unrecorded repositories” when some came from a repository the paper names or has in its text, or from none recorded); hover it for the repositories the samples that ran came from.
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Relational Graph Transformer 16 May 2025 · 1 repository · arXiv:2505.10960Syntology official (archive's flag): 2 ran · 3 ran (of which 1 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 4 harvested samples)
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Biologically Plausible Brain Graph Transformer 13 Feb 2025 · 1 repository · arXiv:2502.08958Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 1 with no instrument failure: 1 honoured, 0 violated, 0 with no contract checked; 2 where Syntology's instrument failed) · 5 unverified (of 8 harvested samples) · 8 pointer-only (licence)
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DeepGate4: Efficient and Effective Representation Learning for Circuit Design at Scale 2 Feb 2025 · 1 repository · arXiv:2502.01681Syntology official (archive's flag): 1 ran · 1 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 1 where Syntology's instrument failed) · 0 unverified (of 1 harvested sample) · 1 pointer-only (licence)
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An Efficient Diffusion-based Non-Autoregressive Solver for Traveling Salesman Problem 23 Jan 2025 · 1 repository · arXiv:2501.13767Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 6 harvested samples)
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Long-range Brain Graph Transformer 2 Jan 2025 · 1 repository · arXiv:2501.01100Syntology official (archive's flag): 2 ran · 2 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 2 where Syntology's instrument failed) · 0 unverified (of 2 harvested samples) · 2 pointer-only (licence)
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Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention 9 Oct 2024 · 1 repository · arXiv:2410.06746Syntology official (archive's flag): 13 ran · 13 ran (of which 0 constructed an object rather than computing a result; 10 with no instrument failure: 2 honoured, 0 violated, 8 with no contract checked; 3 where Syntology's instrument failed) · 1 unverified (of 14 harvested samples) · 14 pointer-only (licence)
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DeFoG: Discrete Flow Matching for Graph Generation 5 Oct 2024 · 1 repository · arXiv:2410.04263Syntology official (archive's flag): 12 ran · 12 ran (of which 0 constructed an object rather than computing a result; 11 with no instrument failure: 1 honoured, 0 violated, 10 with no contract checked; 1 where Syntology's instrument failed) · 3 unverified (of 15 harvested samples) · 1 pointer-only (licence)
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Self-Explainable Graph Transformer for Link Sign Prediction 16 Aug 2024 · 1 repository · arXiv:2408.08754Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 6 unverified (of 9 harvested samples) · 9 pointer-only (licence)
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What Are Good Positional Encodings for Directed Graphs? 30 Jul 2024 · 1 repository · arXiv:2407.20912Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 6 harvested samples) · 6 pointer-only (licence)
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PolyFormer: Scalable Node-wise Filters via Polynomial Graph Transformer 19 Jul 2024 · 1 repository · arXiv:2407.14459Syntology official (archive's flag): 10 ran · 10 ran (of which 0 constructed an object rather than computing a result; 8 with no instrument failure: 1 honoured, 0 violated, 7 with no contract checked; 2 where Syntology's instrument failed) · 4 unverified (of 14 harvested samples) · 14 pointer-only (licence)
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Towards Universal Mesh Movement Networks 29 Jun 2024 · 1 repository · arXiv:2407.00382Syntology official (archive's flag): 3 ran · 3 ran (of which 1 constructed an object rather than computing a result; 1 with no instrument failure: 0 honoured, 0 violated, 1 with no contract checked; 2 where Syntology's instrument failed) · 4 unverified (of 7 harvested samples)
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Efficient Sharpness-Aware Minimization for Molecular Graph Transformer Models 19 Jun 2024 · 1 repository · arXiv:2406.13137Syntology official (archive's flag): 7 ran · 7 ran (of which 0 constructed an object rather than computing a result; 7 with no instrument failure: 0 honoured, 0 violated, 7 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 7 harvested samples) · 7 pointer-only (licence)
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Aligning Transformers with Weisfeiler-Leman 5 Jun 2024 · 1 repository · arXiv:2406.03148Syntology official (archive's flag): 1 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 1 honoured, 0 violated, 2 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 4 harvested samples)
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Predictive Modeling with Temporal Graphical Representation on Electronic Health Records 7 May 2024 · 1 repository · arXiv:2405.03943Syntology official (archive's flag): 10 ran · 10 ran (of which 3 constructed an object rather than computing a result; 10 with no instrument failure: 0 honoured, 0 violated, 10 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 10 harvested samples) · 10 pointer-only (licence)
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Less is More: on the Over-Globalizing Problem in Graph Transformers 2 May 2024 · 1 repository · arXiv:2405.01102Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 6 harvested samples) · 6 pointer-only (licence)
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FairGT: A Fairness-aware Graph Transformer 26 Apr 2024 · 1 repository · arXiv:2404.17169Syntology official (archive's flag): 4 ran · 4 ran (of which 0 constructed an object rather than computing a result; 4 with no instrument failure: 1 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 5 harvested samples) · 5 pointer-only (licence)
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On the Theoretical Expressive Power and the Design Space of Higher-Order Graph Transformers 4 Apr 2024 · 1 repository · arXiv:2404.03380Syntology official (archive's flag): 11 ran · 11 ran (of which 0 constructed an object rather than computing a result; 10 with no instrument failure: 0 honoured, 0 violated, 10 with no contract checked; 1 where Syntology's instrument failed) · 2 unverified (of 13 harvested samples) · 5 pointer-only (licence)
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VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections 24 Mar 2024 · 1 repository · arXiv:2403.16030Syntology official (archive's flag): 5 ran · 5 ran (of which 3 constructed an object rather than computing a result; 5 with no instrument failure: 1 honoured, 0 violated, 4 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 6 harvested samples) · 6 pointer-only (licence)
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SpikeGraphormer: A High-Performance Graph Transformer with Spiking Graph Attention 21 Mar 2024 · 1 repository · arXiv:2403.15480Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 6 harvested samples) · 1 pointer-only (licence)
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FlowerFormer: Empowering Neural Architecture Encoding using a Flow-aware Graph Transformer 19 Mar 2024 · 1 repository · arXiv:2403.12821Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 6 harvested samples) · 6 pointer-only (licence)
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OpenGraph: Towards Open Graph Foundation Models 2 Mar 2024 · 1 repository · arXiv:2403.01121Syntology official (archive's flag): 2 ran · 2 ran (of which 0 constructed an object rather than computing a result; 2 with no instrument failure: 0 honoured, 0 violated, 2 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 5 harvested samples)
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Cell Graph Transformer for Nuclei Classification 20 Feb 2024 · 1 repository · arXiv:2402.12946Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 4 unverified (of 10 harvested samples) · 10 pointer-only (licence)
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Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers 7 Feb 2024 · 3 repositories · arXiv:2402.04538Syntology official (archive's flag): 9 ran · 10 ran (of which 1 constructed an object rather than computing a result; 10 with no instrument failure: 0 honoured, 0 violated, 10 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 13 harvested samples)
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Topology-Informed Graph Transformer 3 Feb 2024 · 2 repositories · arXiv:2402.02005Syntology official (archive's flag): 8 ran · 17 ran (of which 0 constructed an object rather than computing a result; 17 with no instrument failure: 0 honoured, 2 violated, 15 with no contract checked; 0 where Syntology's instrument failed) · 4 unverified (of 21 harvested samples) · 21 pointer-only (licence)
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Graph Transformers for Large Graphs 18 Dec 2023 · 1 repository · arXiv:2312.11109Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 2 with no instrument failure: 0 honoured, 0 violated, 2 with no contract checked; 1 where Syntology's instrument failed) · 2 unverified (of 5 harvested samples) · 5 pointer-only (licence)
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A Graph-Based Approach for Category-Agnostic Pose Estimation 29 Nov 2023 · 2 repositories · arXiv:2311.17891Syntology official: no sample here; runs from other or unrecorded repositories · 2 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 2 where Syntology's instrument failed) · 0 unverified (of 2 harvested samples) · 2 pointer-only (licence)
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Probabilistically Rewired Message-Passing Neural Networks 3 Oct 2023 · 1 repository · arXiv:2310.02156Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 2 unverified (of 8 harvested samples) · 8 pointer-only (licence)
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Revisiting Mobility Modeling with Graph: A Graph Transformer Model for Next Point-of-Interest Recommendation 2 Oct 2023 · 1 repository · arXiv:2310.01224Syntology official (archive's flag): 8 ran · 8 ran (of which 0 constructed an object rather than computing a result; 8 with no instrument failure: 0 honoured, 1 violated, 7 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 9 harvested samples) · 9 pointer-only (licence)
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Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark 1 Sep 2023 · 2 repositories · arXiv:2309.00367Syntology official (archive's flag): 7 ran · 8 ran (of which 0 constructed an object rather than computing a result; 8 with no instrument failure: 0 honoured, 2 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 4 unverified (of 12 harvested samples) · 6 pointer-only (licence)
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Transitivity-Preserving Graph Representation Learning for Bridging Local Connectivity and Role-based Similarity 18 Aug 2023 · 3 repositories · arXiv:2308.09517Syntology official (archive's flag): 3 ran · 19 ran (of which 0 constructed an object rather than computing a result; 16 with no instrument failure: 0 honoured, 0 violated, 16 with no contract checked; 3 where Syntology's instrument failed) · 7 unverified (of 26 harvested samples)
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Graph Transformer for Recommendation 4 Jun 2023 · 1 repository · arXiv:2306.02330Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 3 harvested samples) · 3 pointer-only (licence)
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Graph Inductive Biases in Transformers without Message Passing 27 May 2023 · 2 repositories · arXiv:2305.17589Syntology official (archive's flag): 6 ran · 6 ran (of which 0 constructed an object rather than computing a result; 6 with no instrument failure: 0 honoured, 0 violated, 6 with no contract checked; 0 where Syntology's instrument failed) · 6 unverified (of 12 harvested samples) · 1 pointer-only (licence)
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Learning Subpocket Prototypes for Generalizable Structure-based Drug Design 22 May 2023 · 1 repository · arXiv:2305.13997Syntology community repositories only · 1 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 1 where Syntology's instrument failed) · 1 unverified (of 2 harvested samples) · 2 pointer-only (licence)
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Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation 21 May 2023 · 2 repositories · arXiv:2305.12347Syntology official: harvested, nothing ran · 3 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 3 where Syntology's instrument failed) · 1 unverified (of 4 harvested samples) · 3 pointer-only (licence)
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HM-ViT: Hetero-modal Vehicle-to-Vehicle Cooperative perception with vision transformer 20 Apr 2023 · 1 repository · arXiv:2304.10628Syntology 17 ran (of which 7 constructed an object rather than computing a result; 9 with no instrument failure: 2 honoured, 0 violated, 7 with no contract checked; 8 where Syntology's instrument failed) · 4 unverified (of 21 harvested samples) · 21 pointer-only (licence)
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TranSG: Transformer-Based Skeleton Graph Prototype Contrastive Learning with Structure-Trajectory Prompted Reconstruction for Person Re-Identification 13 Mar 2023 · 2 repositories · arXiv:2303.06819Syntology official (archive's flag): 4 ran · 4 ran (of which 0 constructed an object rather than computing a result; 4 with no instrument failure: 0 honoured, 0 violated, 4 with no contract checked; 0 where Syntology's instrument failed) · 2 unverified (of 6 harvested samples)
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Exphormer: Sparse Transformers for Graphs 10 Mar 2023 · 1 repository · arXiv:2303.06147Syntology official (archive's flag): 1 ran · 1 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 1 where Syntology's instrument failed) · 0 unverified (of 1 harvested sample)
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Contrastive Video Question Answering via Video Graph Transformer 27 Feb 2023 · 1 repository · arXiv:2302.13668Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 3 harvested samples)
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Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Hierarchical Structures 17 Feb 2023 · 2 repositories · arXiv:2302.08647Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 2 unverified (of 5 harvested samples) · 2 pointer-only (licence)
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Attending to Graph Transformers 8 Feb 2023 · 1 repository · arXiv:2302.04181Syntology official (archive's flag): 5 ran · 5 ran (of which 0 constructed an object rather than computing a result; 5 with no instrument failure: 0 honoured, 0 violated, 5 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 8 harvested samples) · 4 pointer-only (licence)
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A Generalization of ViT/MLP-Mixer to Graphs 27 Dec 2022 · 3 repositories · arXiv:2212.13350Syntology community repositories only · 2 ran (of which 0 constructed an object rather than computing a result; 2 with no instrument failure: 0 honoured, 0 violated, 2 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 3 harvested samples)
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Hierarchical Graph Transformer with Adaptive Node Sampling 8 Oct 2022 · 1 repository · arXiv:2210.03930Syntology official (archive's flag): 6 ran · 6 ran (of which 2 constructed an object rather than computing a result; 5 with no instrument failure: 2 honoured, 0 violated, 3 with no contract checked; 1 where Syntology's instrument failed) · 0 unverified (of 6 harvested samples) · 6 pointer-only (licence)
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DiGress: Discrete Denoising diffusion for graph generation 29 Sep 2022 · 3 repositories · arXiv:2209.14734Syntology official: harvested, nothing ran · 15 ran (of which 10 constructed an object rather than computing a result; 10 with no instrument failure: 0 honoured, 0 violated, 10 with no contract checked; 5 where Syntology's instrument failed) · 10 unverified (of 25 harvested samples)
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Mask and Reason: Pre-Training Knowledge Graph Transformers for Complex Logical Queries 16 Aug 2022 · 1 repository · arXiv:2208.07638Syntology official (archive's flag): 7 ran · 7 ran (of which 0 constructed an object rather than computing a result; 7 with no instrument failure: 0 honoured, 0 violated, 7 with no contract checked; 0 where Syntology's instrument failed) · 3 unverified (of 10 harvested samples)
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Video Graph Transformer for Video Question Answering 12 Jul 2022 · 1 repository · arXiv:2207.05342Syntology official (archive's flag): 9 ran · 9 ran (of which 5 constructed an object rather than computing a result; 8 with no instrument failure: 0 honoured, 0 violated, 8 with no contract checked; 1 where Syntology's instrument failed) · 5 unverified (of 14 harvested samples)
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Pure Transformers are Powerful Graph Learners 6 Jul 2022 · 2 repositories · arXiv:2207.02505Syntology official (archive's flag): 7 ran · 7 ran (of which 0 constructed an object rather than computing a result; 7 with no instrument failure: 0 honoured, 2 violated, 5 with no contract checked; 0 where Syntology's instrument failed) · 0 unverified (of 7 harvested samples) · 7 pointer-only (licence)
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NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphs 10 Jun 2022 · 1 repository · arXiv:2206.04910Syntology official (archive's flag): 2 ran · 2 ran (of which 1 constructed an object rather than computing a result; 1 with no instrument failure: 0 honoured, 0 violated, 1 with no contract checked; 1 where Syntology's instrument failed) · 0 unverified (of 2 harvested samples)
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Recipe for a General, Powerful, Scalable Graph Transformer 25 May 2022 · 4 repositories · arXiv:2205.12454Syntology community repositories only · 3 ran (of which 0 constructed an object rather than computing a result; 1 with no instrument failure: 0 honoured, 0 violated, 1 with no contract checked; 2 where Syntology's instrument failed) · 18 unverified (of 21 harvested samples)
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Think Global, Act Local: Dual-scale Graph Transformer for Vision-and-Language Navigation 23 Feb 2022 · 1 repository · arXiv:2202.11742Syntology 4 ran (of which 0 constructed an object rather than computing a result; 2 with no instrument failure: 0 honoured, 1 violated, 1 with no contract checked; 2 where Syntology's instrument failed) · 1 unverified (of 5 harvested samples) · 5 pointer-only (licence)
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Global Self-Attention as a Replacement for Graph Convolution 7 Aug 2021 · 3 repositories · arXiv:2108.03348Syntology official (archive's flag): 3 ran · 3 ran (of which 0 constructed an object rather than computing a result; 3 with no instrument failure: 0 honoured, 0 violated, 3 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 4 harvested samples)
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Anomaly Detection in Dynamic Graphs via Transformer 18 Jun 2021 · 1 repository · arXiv:2106.09876Syntology 5 ran (of which 0 constructed an object rather than computing a result; 5 with no instrument failure: 0 honoured, 0 violated, 5 with no contract checked; 0 where Syntology's instrument failed) · 1 unverified (of 6 harvested samples)
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A Generalization of Transformer Networks to Graphs 17 Dec 2020 · 3 repositories · arXiv:2012.09699Syntology official (archive's flag): 2 ran · 2 ran (of which 0 constructed an object rather than computing a result; 0 with no instrument failure: 0 honoured, 0 violated, 0 with no contract checked; 2 where Syntology's instrument failed) · 0 unverified (of 2 harvested samples)
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Benchmarking Graph Neural Networks 2 Mar 2020 · 15 repositories · arXiv:2003.00982Syntology official (archive's flag): 3 ran · 10 ran (of which 0 constructed an object rather than computing a result; 9 with no instrument failure: 0 honoured, 0 violated, 9 with no contract checked; 1 where Syntology's instrument failed) · 13 unverified (of 23 harvested samples) · 1 pointer-only (licence)