Methods › AlphaFold
AlphaFold
archive 2025-07-28 Description, source and code snippet are the archive's method entry.
AlphaFold is a deep learning based algorithm for accurate protein structure prediction. AlphaFold incorporates physical and biological knowledge about protein structure, leveraging multi-sequence alignments, into the design of the deep learning algorithm.
Description from: Highly accurate protein structure prediction with AlphaFold
Image credit: DeepMind
Papers archive 2025-07-28
30 shown of 87, newest first. Repository counts are the archive's code-links table. A Syntology line states what Syntology ran from that paper's harvested code; it is per sample and not a correctness claim.
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Probably Approximately Correct Labels 12 Jun 2025 · 1 repository · arXiv:2506.10908Syntology ran 1 of 4 samples · 3 unverified · 4 pointer-only (licence)
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FAPS: A Fast Platform for Protein Structureomics Analysis 11 Jun 2025 · 0 repositories · arXiv:2506.10134
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AlphaFold Database Debiasing for Robust Inverse Folding 10 Jun 2025 · 0 repositories · arXiv:2506.08365
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Improving Protein Sequence Design through Designability Preference Optimization 30 May 2025 · 0 repositories · arXiv:2506.00297
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PSBench: a large-scale benchmark for estimating the accuracy of protein complex structural models 13 May 2025 · 1 repository · arXiv:2505.22674
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Cognitio Emergens: Agency, Dimensions, and Dynamics in Human-AI Knowledge Co-Creation 6 May 2025 · 0 repositories · arXiv:2505.03105
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From Possibility to Precision in Macromolecular Ensemble Prediction 3 May 2025 · 0 repositories · arXiv:2505.01919
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An All-Atom Generative Model for Designing Protein Complexes 17 Apr 2025 · 1 repository · arXiv:2504.13075Syntology ran 3 of 3 samples · 0 unverified
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Hierarchical protein backbone generation with latent and structure diffusion 12 Apr 2025 · 0 repositories · arXiv:2504.09374Syntology ran 9 of 18 samples · 9 unverified
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Hallucination, reliability, and the role of generative AI in science 11 Apr 2025 · 0 repositories · arXiv:2504.08526
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PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modelling and machine learning 17 Mar 2025 · 0 repositories · arXiv:2503.13329
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Advanced Deep Learning Methods for Protein Structure Prediction and Design 14 Mar 2025 · 0 repositories · arXiv:2503.13522
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Reinforcement Learning and Life Cycle Assessment for a Circular Economy -- Towards Progressive Computer Science 13 Mar 2025 · 0 repositories · arXiv:2503.10822
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A Model-Centric Review of Deep Learning for Protein Design 26 Feb 2025 · 0 repositories · arXiv:2502.19173
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Characterizing the Conformational States of G Protein Coupled Receptors Generated with AlphaFold 24 Feb 2025 · 1 repository · arXiv:2502.17628
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ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone Generation 20 Feb 2025 · 1 repository · arXiv:2502.14637
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Deep Learning of Proteins with Local and Global Regions of Disorder 17 Feb 2025 · 1 repository · arXiv:2502.11326
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The Vendiscope: An Algorithmic Microscope For Data Collections 15 Feb 2025 · 0 repositories · arXiv:2502.10828
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AffinityFlow: Guided Flows for Antibody Affinity Maturation 14 Feb 2025 · 0 repositories · arXiv:2502.10365
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Accurate Pocket Identification for Binding-Site-Agnostic Docking 4 Feb 2025 · 1 repository · arXiv:2502.02371
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A Survey on Memory-Efficient Large-Scale Model Training in AI for Science 21 Jan 2025 · 0 repositories · arXiv:2501.11847
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EMICSS: Added-value annotations for EMDB entries 18 Jan 2025 · 1 repository · arXiv:2501.10882
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Re-visiting the intracellular pathway of transferrin on board of a mathematical simulation 18 Dec 2024 · 0 repositories · arXiv:2412.14131
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Applications of Knot Theory for the Improvement of the AlphaFold Protein Database 15 Dec 2024 · 0 repositories · arXiv:2412.11229
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FlowDock: Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction 14 Dec 2024 · 2 repositories · arXiv:2412.10966Syntology ran 0 of 10 samples · 10 unverified
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Precise Antigen-Antibody Structure Predictions Enhance Antibody Development with HelixFold-Multimer 13 Dec 2024 · 0 repositories · arXiv:2412.09826
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Leveraging Multi-modal Representations to Predict Protein Melting Temperatures 5 Dec 2024 · 0 repositories · arXiv:2412.04526
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Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning 19 Nov 2024 · 0 repositories · arXiv:2411.12370
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Beyond Current Boundaries: Integrating Deep Learning and AlphaFold for Enhanced Protein Structure Prediction from Low-Resolution Cryo-EM Maps 30 Oct 2024 · 0 repositories · arXiv:2410.23321
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MAMMAL -- Molecular Aligned Multi-Modal Architecture and Language 28 Oct 2024 · 1 repository · arXiv:2410.22367
Tasks archive 2025-07-28
20 shown of 55 tasks the archive attaches to papers tagged with this method, by distinct papers. A task without a page in the catalog is plain text.
Usage over time archive 2025-07-28
Components: the archive holds no method-to-method composition, so PwC's Components table cannot be rebuilt; the Papers list carries no Results column for the same reason (the archive does not join its leaderboard rows to method tags).
Categories archive 2025-07-28
The archive places this method in no collection.
Report a problem or propose a change · a person checks every report against the paper or source before anything changes; decisions are listed on /corrections