Datasets › PubChemQA
PubChemQA
PubChemQA consists of molecules and their corresponding textual descriptions from PubChem. It contains a single type of question, i.e., please describe the molecule. We remove molecules that cannot be processed by RDKit [Landrum et al., 2021] to generate 2D molecular graphs. We also remove texts with less than 4 words, and crops descriptions with more than 256 words. Finally, we obtain 325, 754 unique molecules and 365, 129 molecule-text pairs. On average, each text description contains 17 words.
Benchmarks archive 2025-07-28
All 1 leaderboard whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.
| First row (archive order) | Paper | Code | ||||
|---|---|---|---|---|---|---|
| Question Answering | PubChemQA | BioMedGPT-10B BLEU-2 0.234 | BioMedGPT: Open Multimodal Generative Pre-trained... | pharmolix/openbiomed | 2 | Compare |
Papers archive 2025-07-28
2 shown of 2 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 3. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.
| Date | Samples run Syntology | |||
|---|---|---|---|---|
| BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine | 1 | 1 | 18 Aug 2023 | not harvested |
| Llama 2: Open Foundation and Fine-Tuned Chat Models | 19 | 1 | 18 Jul 2023 | ran 31 of 52 samples (21 unverified; 16 pointer-only for licence) |
Dataset loaders archive 2025-07-28
No loader listed in the archive.
Tasks archive 2025-07-28
License archive 2025-07-28
MIT
Modalities archive 2025-07-28
No modality tagged.
Languages archive 2025-07-28
Variants archive 2025-07-28
- PubChemQA
1 variant name, as the archive lists them.
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