iRodent (iRodent Animal Pose Estimation)

Description: The "iRodent" dataset contains rodent species observations obtained using the iNaturalist API, with a focus on Suborder Myomorpha (Taxon ID: 16). The dataset features prominent rodent species like Muskrat, Brown Rat, House Mouse, Black Rat, Hispid Cotton Rat, Meadow Vole, Bank Vole, Deer Mouse, White-footed Mouse, and Striped Field Mouse. The dataset provides manually labeled keypoints for pose estimation and segmentation masks for a subset of images using a Mask R-CNN model.

If you use this data, please cite:

Ye, S., Filippova, A., Lauer, J. et al. SuperAnimal pretrained pose estimation models for behavioral analysis. Nat Commun 15, 5165 (2024). https://doi.org/10.1038/s41467-024-48792-2

Creator: Adaptive Intelligence Lab at EPFL: https://www.mackenziemathislab.org/

Data Format: COCO format Number of Images: 443 Species: Muskrat, Brown Rat, House Mouse, Black Rat, Hispid Cotton Rat, Meadow Vole, Bank Vole, Deer Mouse, White-footed Mouse, Striped Field Mouse Image Resolution: Varied (800x600 to 5184x3456 pixels) Annotations: Pose keypoints and generated segmentation masks by Tian Qiu and Mackenzie Mathis. License: Apache 2.0 Keywords: animal pose estimation, behaviour analysis, keypoints, rodent

Contact: Mackenzie Mathis Email: mackenzie.mathis@epfl.ch