GDA (Gene-Disease Associations Corpus)

2 Apr 2019 archive 2025-07-28

The gene-disease associations corpus contains 30,192 titles and abstracts from PubMed articles that have been automatically labelled for genes, diseases and gene-disease associations via distant supervision. The test set is comprised of 1000 of these examples. It is common to hold out a random 20% of the examples in the train set as a validation set.

Homepage Benchmarks Papers JSON

Benchmarks archive 2025-07-28

All 2 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.

		First row (archive order)	Paper	Code
Relation Extraction	GDA	SAISORE+CR+ET-SciBERT F1 87.1	SAIS: Supervising and Augmenting Intermediate Steps for...	xiaoyuxin1002/sais	9	Compare
Joint Entity and Relation Extraction	GDA	seq2rel Relation F1 55.2	A sequence-to-sequence approach for document-level...	johngiorgi/seq2rel +1	1	Compare

Papers archive 2025-07-28

9 shown of 9 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 10. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.

			Date	Samples run Syntology
A Masked Image Reconstruction Network for Document-level Relation Extraction	0	1	21 Apr 2022	not harvested
A sequence-to-sequence approach for document-level relation extraction	2	2	3 Apr 2022	not harvested
A Densely Connected Criss-Cross Attention Network for Document-level Relation Extraction	0	1	26 Mar 2022	not harvested
Document-level Relation Extraction with Context Guided Mention Integration and Inter-pair Reasoning	0	1	13 Jan 2022	not harvested
SAIS: Supervising and Augmenting Intermediate Steps for Document-Level Relation Extraction	1	1	24 Sep 2021	not harvested
Document-level Relation Extraction as Semantic Segmentation	2	1	7 Jun 2021	not harvested
Entity Structure Within and Throughout: Modeling Mention Dependencies for Document-Level Relation Extraction	3	1	20 Feb 2021	not harvested
Document-Level Relation Extraction with Adaptive Thresholding and Localized Context Pooling	1	1	21 Oct 2020	ran 2 of 2 samples (0 unverified; 2 pointer-only for licence)
Reasoning with Latent Structure Refinement for Document-Level Relation Extraction	2	1	13 May 2020	ran 5 of 7 samples (2 unverified; 6 pointer-only for licence)

Dataset loaders archive 2025-07-28

No loader listed in the archive.

Tasks archive 2025-07-28

Relation Extraction Joint Entity and Relation Extraction

License archive 2025-07-28

GNU Affero General Public License

Modalities archive 2025-07-28

No modality tagged.

Languages archive 2025-07-28

No language tagged.

Variants archive 2025-07-28

1 variant name, as the archive lists them.

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