Datasets › Decagon
Decagon (Bio-decagon)
Bio-decagon is a dataset for polypharmacy side effect identification problem framed as a multirelational link prediction problem in a two-layer multimodal graph/network of two node types: drugs and proteins. Protein-protein interaction network describes relationships between proteins. Drug-drug interaction network contains 964 different types of edges (one for each side effect type) and describes which drug pairs lead to which side effects. Lastly, drug-protein links describe the proteins targeted by a given drug.
The final network after linking entity vocabularies used by different databases has 645 drug and 19,085 protein nodes connected by 715,612 protein-protein, 4,651,131 drug-drug, and 18,596 drug-protein edges.
Source: Modeling polypharmacy side effects with graph convolutional networks Image Source: Modeling polypharmacy side effects with graph convolutional networks
Benchmarks archive 2025-07-28
All 1 leaderboard whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.
| First row (archive order) | Paper | Code | ||||
|---|---|---|---|---|---|---|
| Link Prediction | Decagon | Decagon AUROC 0.872 | Modeling polypharmacy side effects with graph... | mims-harvard/decagon | 2 | Compare |
Papers archive 2025-07-28
2 shown of 2 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 33. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.
| Date | Samples run Syntology | |||
|---|---|---|---|---|
| Tri-graph Information Propagation for Polypharmacy Side Effect Prediction | 1 | 1 | 28 Jan 2020 | not harvested |
| Modeling polypharmacy side effects with graph convolutional networks | 1 | 1 | 2 Feb 2018 | not harvested |
Dataset loaders archive 2025-07-28
No loader listed in the archive.
Tasks archive 2025-07-28
License archive 2025-07-28
Unknown
Modalities archive 2025-07-28
Languages archive 2025-07-28
No language tagged.
Variants archive 2025-07-28
- Decagon
1 variant name, as the archive lists them.
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