Datasets › BioRED
BioRED
BioRED is a first-of-its-kind biomedical relation extraction dataset with multiple entity types (e.g. gene/protein, disease, chemical) and relation pairs (e.g. gene–disease; chemical–chemical) at the document level, on a set of600 PubMed abstracts. Furthermore, BioRED label each relation as describing either a novel finding or previously known background knowledge, enabling automated algorithms to differentiate between novel and background information.
Benchmarks archive 2025-07-28
All 3 leaderboards whose dataset resolves to this page shown (sort by any header). "First row" is the archive's own first row at snapshot, in the archive's row order; nothing here re-ranks and metric direction is not asserted.
| First row (archive order) | Paper | Code | ||||
|---|---|---|---|---|---|---|
| Named Entity Recognition (NER) | BioRED | PubMedBERT-CRF F1 89.3 | BioRED: A Rich Biomedical Relation Extraction Dataset | ncbi/BioRED | 3 | Compare |
| Binary Relation Extraction | BioRED | PubMedBERT F1 72.9 | BioRED: A Rich Biomedical Relation Extraction Dataset | ncbi/BioRED | 2 | Compare |
| Relation Extraction | BioRED | PubMedBERT F1 58.9 | BioRED: A Rich Biomedical Relation Extraction Dataset | ncbi/BioRED | 2 | Compare |
Papers archive 2025-07-28
2 shown of 2 papers with a leaderboard row on this dataset's benchmarks, newest first. The archive's own "papers using this dataset" list was never published, so this is the benchmark-backed subset; the archive's count for this dataset is 25. The Syntology column is from Syntology's graph (read 2026-09-24), stated per sample; it is not part of any archive number.
| Date | Samples run Syntology | |||
|---|---|---|---|---|
| BioRED: A Rich Biomedical Relation Extraction Dataset | 1 | 5 | 8 Apr 2022 | not harvested |
| BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer | 0 | 2 | 11 Jan 2021 | not harvested |
Dataset loaders archive 2025-07-28
No loader listed in the archive.
Tasks archive 2025-07-28
License archive 2025-07-28
No licence recorded in the archive. Absence here is not a statement about the dataset's terms.
Modalities archive 2025-07-28
Languages archive 2025-07-28
Variants archive 2025-07-28
- BioRED
1 variant name, as the archive lists them.
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