{"url":"/task/protein-ligand-affinity-prediction","name":"Protein-Ligand Affinity Prediction","slug":"protein-ligand-affinity-prediction","description_markdown":null,"categories":[{"name":"Medical","url":"/area/medical"}],"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","slug_source":"derived"},"counts":{"papers_tagged":8,"papers_with_code":4,"benchmarks":2,"benchmark_tables_in_archive":2,"benchmark_tables_shown":2,"benchmark_tables_withheld_as_spam":0,"benchmark_definition":"a leaderboard table with at least one row; benchmark_tables_shown also counts the zero-row tables; benchmark_tables_in_archive adds the tables withheld as spam","datasets":0,"subtasks":1,"parent_tasks":0},"benchmarks":[{"leaderboard":"/sota/protein-ligand-affinity-prediction-on-pdbbind","slug":"protein-ligand-affinity-prediction-on-pdbbind","dataset":"PDBbind","dataset_url":null,"rows_in_archive":7,"metrics":["RMSE"],"first_row_in_archive_order":{"model":"BAPULM","paper_title":"BAPULM: Binding Affinity Prediction using Language Models","paper_url":"/paper/bapulm-binding-affinity-prediction-using","paper_date":"2024-11-06","arxiv_id":"2411.04150","code_links":[{"title":"radh55sh/BAPULM","url":"https://github.com/radh55sh/BAPULM"}],"syntology":null}},{"leaderboard":"/sota/protein-ligand-affinity-prediction-on-csar","slug":"protein-ligand-affinity-prediction-on-csar","dataset":"CSAR-HiQ","dataset_url":null,"rows_in_archive":3,"metrics":["RMSE"],"first_row_in_archive_order":{"model":"BAPULM","paper_title":"BAPULM: Binding Affinity Prediction using Language Models","paper_url":"/paper/bapulm-binding-affinity-prediction-using","paper_date":"2024-11-06","arxiv_id":"2411.04150","code_links":[{"title":"radh55sh/BAPULM","url":"https://github.com/radh55sh/BAPULM"}],"syntology":null}}],"datasets":[],"subtasks":[{"url":"/task/mhc-presentation-prediction","name":"MHC presentation prediction"}],"parent_tasks":[],"papers":{"order":"repositories listed in the archive (desc), then date (desc); the archive holds no stars","population":"papers tagged with this task that list at least one repository in the archive","shown":4,"of":4,"tagged_in_all":8,"items":[{"url":"/paper/bapulm-binding-affinity-prediction-using","title":"BAPULM: Binding Affinity Prediction using Language Models","date":"2024-11-06","arxiv_id":"2411.04150","repositories_listed":1,"syntology":null},{"url":"/paper/plapt-protein-ligand-binding-affinity","title":"PLAPT: Protein-Ligand Binding Affinity Prediction Using Pretrained Transformers","date":"2024-02-08","arxiv_id":null,"repositories_listed":1,"syntology":null},{"url":"/paper/efficient-and-accurate-physics-aware","title":"Efficient and Accurate Physics-aware Multiplex Graph Neural Networks for 3D Small Molecules and Macromolecule Complexes","date":"2022-06-06","arxiv_id":"2206.02789","repositories_listed":1,"syntology":null},{"url":"/paper/structure-aware-interactive-graph-neural","title":"Structure-aware Interactive Graph Neural Networks for the Prediction of Protein-Ligand Binding Affinity","date":"2021-07-21","arxiv_id":"2107.10670","repositories_listed":1,"syntology":null}],"syntology_records":0,"syntology_note":"a paper without a record is not a recorded non-run: it may lack an arXiv id or simply be absent from the graph layer"},"description_links":{"kept":0,"unwrapped_to_text":0,"bare_urls_linked":0,"relative_images_dropped":0,"rule":"internal links are kept only when the target slug exists in the catalog"},"syntology":{"read_at":"2026-09-24T18:15:14+00:00","claim":"Per-sample execution status on synthesized fixtures ('ran N of M samples'); not a correctness claim and not a ranking signal.","status_vocabulary":{"ran_honours":"ran, honoured the contract we drafted","ran_violates":"ran, violated the contract we drafted","ran_draft_wrong":"ran; our contract draft was wrong, not the code","ran_fixture":"ran; our fixture could not drive it","ran":"ran on a synthesized input","unverified":"unverified (harvested, no recorded run)"}},"not_shown":{"libraries":"the archive has no per-task library table","trend_sparklines":"the Trend column of the benchmarks table was a rendered image; it is not in the archive","social_and_latest_sorts":"stars and social signals are not in the archive"}}