{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/toward-a-minimal-information-reporting","title":"Guidelines for reporting cell types: the MIRACL standard","arxiv_id":"2204.09673","date":"2022-04-18","proceeding":null,"authors":["Tiago Lubiana","Paola Roncaglia","Christopher J. Mungall","Ellen M. Quardokus","Joshua D. Fortriede","David Osumi-Sutherland","Alexander D. Diehl"],"abstract":"Cell types are at the root of modern biology, and describing them is a core task of the Human Cell Atlas project. Surprisingly, there are no standards for reporting new cell types, leading to a gap between classes mentioned in biomedical literature and the Cell Ontology, the primary registry of cell types. Here we introduce the Minimal Information Reporting About a CelL (MIRACL) standard, a guideline for describing cell types alongside scientific articles. In a MIRACL sheet, authors organize a label, a diagnostic description, a taxon, an anatomical structure, and a parent cell class for each cell type of interest. The MIRACL standard bridges the gap between wet-lab researchers and ontologists, facilitating the integration of biomedical knowledge into ontologies and artificial intelligence systems.","url_abs":"https://arxiv.org/abs/2204.09673v2","url_pdf":"https://arxiv.org/pdf/2204.09673v2.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"toward-a-minimal-information-reporting","repo_url":"https://github.com/obophenotype/cell-ontology","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":1,"framework":"none","reach":null}],"tasks":[{"task_slug":"articles","task_name":"Articles"},{"task_slug":"diagnostic","task_name":"Diagnostic"}],"methods":[{"method_slug":"ontology","method_name":"Ontology"}],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}