{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/sumpubmed-summarization-dataset-of-pubmed","title":"SumPubMed: Summarization Dataset of PubMed Scientific Articles","arxiv_id":null,"date":"2021-08-01","proceeding":"ACL 2021 5","authors":["Vivek Gupta","Prerna Bharti","Pegah Nokhiz","Harish Karnick"],"abstract":"Most earlier work on text summarization is carried out on news article datasets. The summary in these datasets is naturally located at the beginning of the text. Hence, a model can spuriously utilize this correlation for summary generation instead of truly learning to summarize. To address this issue, we constructed a new dataset, SumPubMed , using scientific articles from the PubMed archive. We conducted a human analysis of summary coverage, redundancy, readability, coherence, and informativeness on SumPubMed . SumPubMed is challenging because (a) the summary is distributed throughout the text (not-localized on top), and (b) it contains rare domain-specific scientific terms. We observe that seq2seq models that adequately summarize news articles struggle to summarize SumPubMed . Thus, SumPubMed opens new avenues for the future improvement of models as well as the development of new evaluation metrics.","url_abs":"https://aclanthology.org/2021.acl-srw.30","url_pdf":"https://aclanthology.org/2021.acl-srw.30.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"sumpubmed-summarization-dataset-of-pubmed","repo_url":"https://github.com/vgupta123/sumpubmed","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":null}],"tasks":[{"task_slug":"articles","task_name":"Articles"},{"task_slug":"informativeness","task_name":"Informativeness"},{"task_slug":"text-summarization","task_name":"Text Summarization"}],"methods":[{"method_slug":"lstm","method_name":"LSTM"},{"method_slug":"seq2seq","method_name":"Seq2Seq"},{"method_slug":"sigmoid-activation","method_name":"Sigmoid Activation"},{"method_slug":"tanh-activation","method_name":"Tanh Activation"}],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}