{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/small-area-estimation-of-case-growths-for","title":"Small Area Estimation of Case Growths for Timely COVID-19 Outbreak Detection","arxiv_id":"2312.04110","date":"2023-12-07","proceeding":null,"authors":["Zhaowei She","Zilong Wang","Jagpreet Chhatwal","Turgay Ayer"],"abstract":"The COVID-19 pandemic has exerted a profound impact on the global economy and continues to exact a significant toll on human lives. The COVID-19 case growth rate stands as a key epidemiological parameter to estimate and monitor for effective detection and containment of the resurgence of outbreaks. A fundamental challenge in growth rate estimation and hence outbreak detection is balancing the accuracy-speed tradeoff, where accuracy typically degrades with shorter fitting windows. In this paper, we develop a machine learning (ML) algorithm, which we call Transfer Learning Generalized Random Forest (TLGRF), that balances this accuracy-speed tradeoff. Specifically, we estimate the instantaneous COVID-19 exponential growth rate for each U.S. county by using TLGRF that chooses an adaptive fitting window size based on relevant day-level and county-level features affecting the disease spread. Through transfer learning, TLGRF can accurately estimate case growth rates for counties with small sample sizes. Out-of-sample prediction analysis shows that TLGRF outperforms established growth rate estimation methods. Furthermore, we conducted a case study based on outbreak case data from the state of Colorado and showed that the timely detection of outbreaks could have been improved by up to 224% using TLGRF when compared to the decisions made by Colorado's Department of Health and Environment (CDPHE). To facilitate implementation, we have developed a publicly available outbreak detection tool for timely detection of COVID-19 outbreaks in each U.S. county, which received substantial attention from policymakers.","url_abs":"https://arxiv.org/abs/2312.04110v1","url_pdf":"https://arxiv.org/pdf/2312.04110v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"small-area-estimation-of-case-growths-for","repo_url":"https://github.com/wangzilongri/covid-tracking","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":1,"framework":"none","reach":null}],"tasks":[{"task_slug":"transfer-learning","task_name":"Transfer Learning"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"syntology_url":null,"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}