{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/se-3-transformers-3d-roto-translation","title":"SE(3)-Transformers: 3D Roto-Translation Equivariant Attention Networks","arxiv_id":"2006.10503","date":"2020-06-18","proceeding":"NeurIPS 2020 12","authors":["Fabian B. Fuchs","Daniel E. Worrall","Volker Fischer","Max Welling"],"abstract":"We introduce the SE(3)-Transformer, a variant of the self-attention module for 3D point clouds and graphs, which is equivariant under continuous 3D roto-translations. Equivariance is important to ensure stable and predictable performance in the presence of nuisance transformations of the data input. A positive corollary of equivariance is increased weight-tying within the model. The SE(3)-Transformer leverages the benefits of self-attention to operate on large point clouds and graphs with varying number of points, while guaranteeing SE(3)-equivariance for robustness. We evaluate our model on a toy N-body particle simulation dataset, showcasing the robustness of the predictions under rotations of the input. We further achieve competitive performance on two real-world datasets, ScanObjectNN and QM9. In all cases, our model outperforms a strong, non-equivariant attention baseline and an equivariant model without attention.","url_abs":"https://arxiv.org/abs/2006.10503v3","url_pdf":"https://arxiv.org/pdf/2006.10503v3.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"se-3-transformers-3d-roto-translation","repo_url":"https://github.com/FabianFuchsML/se3-transformer-public","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":1,"framework":"pytorch","reach":{"status":"unanswered"}},{"paper_slug":"se-3-transformers-3d-roto-translation","repo_url":"https://github.com/lucidrains/se3-transformer-pytorch","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"pytorch","reach":null},{"paper_slug":"se-3-transformers-3d-roto-translation","repo_url":"https://github.com/rosettacommons/rosettafold","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"pytorch","reach":{"status":"ok","spdx":"MIT"}},{"paper_slug":"se-3-transformers-3d-roto-translation","repo_url":"https://github.com/trachote/predict_elastic_tensor","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"pytorch","reach":{"status":"ok","spdx":"MIT"}},{"paper_slug":"se-3-transformers-3d-roto-translation","repo_url":"https://github.com/NVIDIA/DeepLearningExamples/tree/master/DGLPyTorch/DrugDiscovery/SE3Transformer","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":0,"framework":"pytorch","reach":null}],"tasks":[{"task_slug":"translation","task_name":"Translation"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":"https://app.syntology.ai/?focus=2006.10503","mcp":{"get_harvested_code_for_paper":{"arxiv_id":"2006.10503"}},"developers":"https://syntology.ai/developers","read_at":"2026-09-24T18:15:14+00:00","read_at_is":"when the build read Syntology's graph, not when any sample ran","claim":"Per-sample execution status on synthesized fixtures; not a correctness claim about the paper. Samples come from repositories linked to the paper, official or community; repo_kind says which.","repos":[{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/trachote/predict_elastic_tensor","reach":{"status":"ok","spdx":"MIT"}},{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/lucidrains/se3-transformer-pytorch","reach":null},{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/FabianFuchsML/se3-transformer-public","reach":{"status":"unanswered"}},{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/NVIDIA/DeepLearningExamples/tree/master/DGLPyTorch/DrugDiscovery/SE3Transformer","reach":null},{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/rosettacommons/rosettafold","reach":{"status":"ok","spdx":"MIT"}}],"summary":{"ran_draft_wrong":1,"unverified":27},"by_repo_kind":{"listed":{"samples":28,"ran":1,"repositories":3}},"repo_kind_vocabulary":{"official":"The archive marks this repository official for the paper","named_in_paper":"The archive records that the paper mentions this repository; it is not marked official","listed":"In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper","found_in_text":"Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted","community":"Not in the archive's code links for this paper; a community repository Syntology harvested"},"n_pointer_only_for_licence":0,"samples":[{"code_sha256_prefix":"00b9e7bd06dbbb81","entry":"get_tensor_device_and_dtype","repo":"lucidrains/se3-transformer-pytorch","repo_kind":"listed","path":"se3_transformer_pytorch/se3_transformer_pytorch.py","file_url":"https://github.com/lucidrains/se3-transformer-pytorch/blob/HEAD/se3_transformer_pytorch/se3_transformer_pytorch.py","link_basis":"first_harvest_node","language":"python","status":"ran_draft_wrong","verification_level":1,"contract_check":"OUTPUT_MISDECLARED","metamorphic_tier":"deterministic","behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"00b9e7bd06dbbb81"}},{"code_sha256_prefix":"cb4619ef753b758f","entry":"calc_lddt_dist","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"DAN-msa/pick_final_models.div.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/DAN-msa/pick_final_models.div.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"cb4619ef753b758f"}},{"code_sha256_prefix":"29e2228c42add029","entry":"count_parameters","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/utils/utils_logging.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/utils/utils_logging.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"29e2228c42add029"}},{"code_sha256_prefix":"c68c3daa8125c3e8","entry":"create_custom_forward","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/Transformer.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/Transformer.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"c68c3daa8125c3e8"}},{"code_sha256_prefix":"217d7fa95a8654fb","entry":"fiber2tensor","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/equivariant_attention/fibers.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/equivariant_attention/fibers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"217d7fa95a8654fb"}},{"code_sha256_prefix":"9f0e16c4abfe096f","entry":"get_ang","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/kinematics.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/kinematics.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"9f0e16c4abfe096f"}},{"code_sha256_prefix":"4eb618ae14addf59","entry":"get_bonded_neigh","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/Attention_module_w_str.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/Attention_module_w_str.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"4eb618ae14addf59"}},{"code_sha256_prefix":"a71c2f40de637572","entry":"get_dih","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/kinematics.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/kinematics.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"a71c2f40de637572"}},{"code_sha256_prefix":"dac71ff1e8526ef4","entry":"get_entry_by_name","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/ffindex.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/ffindex.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"dac71ff1e8526ef4"}},{"code_sha256_prefix":"767887f5d7462380","entry":"get_epsilon","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"utils/etc.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/utils/etc.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"767887f5d7462380"}},{"code_sha256_prefix":"4f20b0ab718934de","entry":"get_fiber_dict","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/equivariant_attention/fibers.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/equivariant_attention/fibers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"4f20b0ab718934de"}},{"code_sha256_prefix":"607f975107d53b59","entry":"get_fiber_tensor","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/equivariant_attention/fibers.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/equivariant_attention/fibers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"607f975107d53b59"}},{"code_sha256_prefix":"0ae837110bf18cc4","entry":"get_pair_dist","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/kinematics.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/kinematics.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"0ae837110bf18cc4"}},{"code_sha256_prefix":"6af62bbb3aa5d036","entry":"get_seqsep","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/InitStrGenerator.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/InitStrGenerator.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"6af62bbb3aa5d036"}},{"code_sha256_prefix":"17b99f2bea9c731b","entry":"lrQres2CAdev","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"DAN-msa/pick_final_models.div.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/DAN-msa/pick_final_models.div.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"17b99f2bea9c731b"}},{"code_sha256_prefix":"6239eb2a3d6fa13e","entry":"make_graph","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/InitStrGenerator.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/InitStrGenerator.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"6239eb2a3d6fa13e"}},{"code_sha256_prefix":"133a4d7dcf9d6536","entry":"make_logdir","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/utils/utils_logging.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/utils/utils_logging.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"133a4d7dcf9d6536"}},{"code_sha256_prefix":"f1184128e675fe8d","entry":"parse_a3m","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/parsers.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/parsers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"f1184128e675fe8d"}},{"code_sha256_prefix":"760631a5eecfc7cf","entry":"parse_hhr","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/parsers.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/parsers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"760631a5eecfc7cf"}},{"code_sha256_prefix":"644ba2df038852fc","entry":"parse_pdb","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/parsers.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/parsers.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"644ba2df038852fc"}},{"code_sha256_prefix":"7db5bc710b7682dc","entry":"rbf","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/Attention_module_w_str.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/Attention_module_w_str.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"7db5bc710b7682dc"}},{"code_sha256_prefix":"897dff3bc4c4b614","entry":"read_data","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/ffindex.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/ffindex.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"897dff3bc4c4b614"}},{"code_sha256_prefix":"205feae362fba7d4","entry":"read_index","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"network/ffindex.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/network/ffindex.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"205feae362fba7d4"}},{"code_sha256_prefix":"0ff7824f74d12394","entry":"smooth","repo":"rosettacommons/rosettafold","repo_kind":"listed","path":"DAN-msa/pick_final_models.div.py","file_url":"https://github.com/rosettacommons/rosettafold/blob/HEAD/DAN-msa/pick_final_models.div.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"0ff7824f74d12394"}},{"code_sha256_prefix":"d7a94dcfe704c989","entry":"split_dataset","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"utils/datamodule.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/utils/datamodule.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"d7a94dcfe704c989"}},{"code_sha256_prefix":"6e03953b326a94ba","entry":"strain_vector","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"utils/etc.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/utils/etc.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"6e03953b326a94ba"}},{"code_sha256_prefix":"a95efb537cb231f0","entry":"to_np","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/utils/utils_data.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/utils/utils_data.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"a95efb537cb231f0"}},{"code_sha256_prefix":"421a0439514724ca","entry":"write_info_file","repo":"trachote/predict_elastic_tensor","repo_kind":"listed","path":"se3t/utils/utils_logging.py","file_url":"https://github.com/trachote/predict_elastic_tensor/blob/HEAD/se3t/utils/utils_logging.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"421a0439514724ca"}}]},"arxiv_metadata":null,"syntology_extracted_results":null}