{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/res-cr-net-a-residual-network-with-a-novel","title":"Res-CR-Net, a residual network with a novel architecture optimized for the semantic segmentation of microscopy images","arxiv_id":"2004.08246","date":"2020-04-14","proceeding":null,"authors":["Hassan Abdallah","Asiri Liyanaarachchi","Maranda Saigh","Samantha Silvers","Suzan Arslanturk","Douglas J. Taatjes","Lars Larsson","Bhanu P. Jena","Domenico L. Gatti"],"abstract":"Deep Neural Networks (DNN) have been widely used to carry out segmentation tasks in both electron and light microscopy. Most DNNs developed for this purpose are based on some variation of the encoder-decoder type U-Net architecture, in combination with residual blocks to increase ease of training and resilience to gradient degradation. Here we introduce Res-CR-Net, a type of DNN that features residual blocks with either a bundle of separable atrous convolutions with different dilation rates or a convolutional LSTM. The number of filters used in each residual block and the number of blocks are the only hyperparameters that need to be modified in order to optimize the network training for a variety of different microscopy images.","url_abs":"https://arxiv.org/abs/2004.08246v1","url_pdf":"https://arxiv.org/pdf/2004.08246v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"res-cr-net-a-residual-network-with-a-novel","repo_url":"https://github.com/dgattiwsu/Res-CR-Net","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"tf","reach":null}],"tasks":[{"task_slug":"decoder","task_name":"Decoder"},{"task_slug":"semantic-segmentation","task_name":"Semantic Segmentation"}],"methods":[{"method_slug":"batch-normalization","method_name":"Batch Normalization"},{"method_slug":"concatenated-skip-connection","method_name":"Concatenated Skip Connection"},{"method_slug":"convolution","method_name":"Convolution"},{"method_slug":"lstm","method_name":"LSTM"},{"method_slug":"max-pooling","method_name":"Max Pooling"},{"method_slug":"relu","method_name":"ReLU"},{"method_slug":"residual-block","method_name":"Residual Block"},{"method_slug":"residual-connection","method_name":"Residual Connection"},{"method_slug":"sigmoid-activation","method_name":"Sigmoid Activation"},{"method_slug":"tanh-activation","method_name":"Tanh Activation"},{"method_slug":"u-net","method_name":"U-Net"}],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"syntology_url":null,"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}