{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/reconmap-an-interactive-visualisation-of","title":"ReconMap: An interactive visualisation of human metabolism","arxiv_id":"1606.00042","date":"2016-05-31","proceeding":null,"authors":[],"abstract":"A genome-scale reconstruction of human metabolism, Recon 2, is available but\nno interface exists to interactively visualise its content integrated with\nomics data and simulation results. We manually drew a comprehensive map,\nReconMap 2.0, that is consistent with the content of Recon 2. We present it\nwithin a web interface that allows content query, visualization of custom\ndatasets and submission of feedback to manual curators. ReconMap can be\naccessed via http://vmh.uni.lu, with network export in a Systems Biology\nGraphical Notation compliant format. A Constraint-Based Reconstruction and\nAnalysis (COBRA) Toolbox extension to interact with ReconMap is available via\nhttps://github.com/opencobra/cobratoolbox.","url_abs":"http://arxiv.org/abs/1606.00042v1","url_pdf":"http://arxiv.org/pdf/1606.00042v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"reconmap-an-interactive-visualisation-of","repo_url":"https://github.com/opencobra/cobratoolbox","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}