{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/outlier-detection-using-self-organizing-maps","title":"Outlier Detection using Self-Organizing Maps for Automated Blood Cell Analysis","arxiv_id":"2208.08834","date":"2022-08-18","proceeding":null,"authors":["Stefan Röhrl","Alice Hein","Lucie Huang","Dominik Heim","Christian Klenk","Manuel Lengl","Martin Knopp","Nawal Hafez","Oliver Hayden","Klaus Diepold"],"abstract":"The quality of datasets plays a crucial role in the successful training and deployment of deep learning models. Especially in the medical field, where system performance may impact the health of patients, clean datasets are a safety requirement for reliable predictions. Therefore, outlier detection is an essential process when building autonomous clinical decision systems. In this work, we assess the suitability of Self-Organizing Maps for outlier detection specifically on a medical dataset containing quantitative phase images of white blood cells. We detect and evaluate outliers based on quantization errors and distance maps. Our findings confirm the suitability of Self-Organizing Maps for unsupervised Out-Of-Distribution detection on the dataset at hand. Self-Organizing Maps perform on par with a manually specified filter based on expert domain knowledge. Additionally, they show promise as a tool in the exploration and cleaning of medical datasets. As a direction for future research, we suggest a combination of Self-Organizing Maps and feature extraction based on deep learning.","url_abs":"https://arxiv.org/abs/2208.08834v1","url_pdf":"https://arxiv.org/pdf/2208.08834v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[],"tasks":[{"task_slug":"out-of-distribution-detection","task_name":"Out-of-Distribution Detection"},{"task_slug":"outlier-detection","task_name":"Outlier Detection"},{"task_slug":"quantization","task_name":"Quantization"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":"https://app.syntology.ai/?focus=2208.08834","mcp":{"get_harvested_code_for_paper":{"arxiv_id":"2208.08834"}},"developers":"https://syntology.ai/developers","read_at":"2026-09-24T18:15:14+00:00","read_at_is":"when the build read Syntology's graph, not when any sample ran","claim":"Per-sample execution status on synthesized fixtures; not a correctness claim about the paper. Samples come from repositories linked to the paper, official or community; repo_kind says which.","repos":[{"provenance":"deterministic:regex_extraction","url":"https://github.com/JustGlowing/minisom","reach":null}],"summary":{"ran_violates":1},"by_repo_kind":{"found_in_text":{"samples":1,"ran":1,"repositories":1}},"repo_kind_vocabulary":{"official":"The archive marks this repository official for the paper","named_in_paper":"The archive records that the paper mentions this repository; it is not marked official","listed":"In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper","found_in_text":"Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted","community":"Not in the archive's code links for this paper; a community repository Syntology harvested"},"n_pointer_only_for_licence":0,"samples":[{"code_sha256_prefix":"6251771a12c964fd","entry":"fast_norm","repo":"JustGlowing/minisom","repo_kind":"found_in_text","path":"minisom.py","file_url":"https://github.com/JustGlowing/minisom/blob/HEAD/minisom.py","link_basis":"first_harvest_node","language":"python","status":"ran_violates","verification_level":1,"contract_check":"VIOLATES","metamorphic_tier":"invariant","behaviour_fingerprint":true,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"6251771a12c964fd"}}]},"arxiv_metadata":null,"syntology_extracted_results":null}