{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/onto2vec-joint-vector-based-representation-of","title":"Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations","arxiv_id":"1802.00864","date":"2018-01-31","proceeding":null,"authors":["Fatima Zohra Smaili","Xin Gao","Robert Hoehndorf"],"abstract":"We propose the Onto2Vec method, an approach to learn feature vectors for\nbiological entities based on their annotations to biomedical ontologies. Our\nmethod can be applied to a wide range of bioinformatics research problems such\nas similarity-based prediction of interactions between proteins, classification\nof interaction types using supervised learning, or clustering.","url_abs":"http://arxiv.org/abs/1802.00864v1","url_pdf":"http://arxiv.org/pdf/1802.00864v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"onto2vec-joint-vector-based-representation-of","repo_url":"https://github.com/bio-ontology-research-group/onto2vec","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":{"status":"unanswered"}}],"tasks":[{"task_slug":"clustering","task_name":"Clustering"},{"task_slug":"classification","task_name":"General Classification"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":"https://app.syntology.ai/?focus=1802.00864","mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}