{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/ifss-net-interactive-few-shot-siamese-network","title":"IFSS-Net: Interactive Few-Shot Siamese Network for Faster Muscle Segmentation and Propagation in Volumetric Ultrasound","arxiv_id":"2011.13246","date":"2020-11-26","proceeding":null,"authors":["Dawood Al Chanti","Vanessa Gonzalez Duque","Marion Crouzier","Antoine Nordez","Lilian Lacourpaille","Diana Mateus"],"abstract":"We present an accurate, fast and efficient method for segmentation and muscle mask propagation in 3D freehand ultrasound data, towards accurate volume quantification. A deep Siamese 3D Encoder-Decoder network that captures the evolution of the muscle appearance and shape for contiguous slices is deployed. We uses it to propagate a reference mask annotated by a clinical expert. To handle longer changes of the muscle shape over the entire volume and to provide an accurate propagation, we devise a Bidirectional Long Short Term Memory module. Also, to train our model with a minimal amount of training samples, we propose a strategy combining learning from few annotated 2D ultrasound slices with sequential pseudo-labeling of the unannotated slices. We introduce a decremental update of the objective function to guide the model convergence in the absence of large amounts of annotated data. After training with a small number of volumes, the decremental update transitions from a weakly-supervised training to a few-shot setting. Finally, to handle the class-imbalance between foreground and background muscle pixels, we propose a parametric Tversky loss function that learns to adaptively penalize false positives and false negatives. We validate our approach for the segmentation, label propagation, and volume computation of the three low-limb muscles on a dataset of 61600 images from 44 subjects. We achieve a Dice score coefficient of over $95~\\%$ and a volumetric error \\textcolor{black}{of} $1.6035 \\pm 0.587~\\%$.","url_abs":"https://arxiv.org/abs/2011.13246v2","url_pdf":"https://arxiv.org/pdf/2011.13246v2.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"ifss-net-interactive-few-shot-siamese-network","repo_url":"https://github.com/DawoodChanti/IFSS-Net","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"tf","reach":null}],"tasks":[{"task_slug":"decoder","task_name":"Decoder"},{"task_slug":"few-shot-learning","task_name":"Few-Shot Learning"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}