{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/htmol-full-stack-solution-for-remote-access","title":"HTMoL: full-stack solution for remote access, visualization, and analysis of Molecular Dynamics trajectory data","arxiv_id":"1711.08078","date":"2017-11-21","proceeding":null,"authors":["Mauricio Carrillo-Tripp","Leonardo Alvarez-Rivera","Omar Israel Lara-Ramírez","Francisco Javier Becerra-Toledo","Adan Vega-Ramírez","Emmanuel Quijas-Valades","Eduardo González-Zavala","Julio Cesar González-Vázquez","Javier García-Vieyra","Nelly Beatriz Santoyo-Rivera","Amilcar Meneses-Viveros","Sergio Victor Chapa-Vergara"],"abstract":"The field of structural bioinformatics has seen significant advances with the\nuse of Molecular Dynamics (MD) simulations of biological systems. The MD\nmethodology has allowed to explain and discover molecular mechanisms in a wide\nrange of natural processes. There is an impending need to readily share the\never-increasing amount of MD data, which has been hindered by the lack of\nspecialized tools in the past. To solve this problem, we present HTMoL, a\nstate-of-the-art plug-in-free hardware-accelerated web application specially\ndesigned to efficiently transfer and visualize raw MD trajectory files on a web\nbrowser. Now, individual research labs can publish MD data on the Internet, or\nuse HTMoL to profoundly improve scientific reports by including supplemental MD\ndata in a journal publication. HTMoL can also be used as a visualization\ninterface to access MD trajectories generated on a high-performance computer\ncenter directly.\n  Availability: HTMoL is available free of charge for academic use. All major\nbrowsers are supported. A complete online documentation including instructions\nfor download, installation, configuration, and examples is available at the\nHTMoL website http://htmol.tripplab.com. Supplementary data are available\nonline. Corresponding author: mauricio.carrillo@cinvestav.mx","url_abs":"http://arxiv.org/abs/1711.08078v1","url_pdf":"http://arxiv.org/pdf/1711.08078v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"htmol-full-stack-solution-for-remote-access","repo_url":"https://github.com/michaelsharp27/HTMoL","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"none","reach":null},{"paper_slug":"htmol-full-stack-solution-for-remote-access","repo_url":"https://github.com/tripplab/HTMoL","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"none","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}