{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/horizon-wise-learning-paradigm-promotes-gene","title":"Horizon-wise Learning Paradigm Promotes Gene Splicing Identification","arxiv_id":"2406.11900","date":"2024-06-15","proceeding":null,"authors":["Qi-Jie Li","Qian Sun","Shao-Qun Zhang"],"abstract":"Identifying gene splicing is a core and significant task confronted in modern collaboration between artificial intelligence and bioinformatics. Past decades have witnessed great efforts on this concern, such as the bio-plausible splicing pattern AT-CG and the famous SpliceAI. In this paper, we propose a novel framework for the task of gene splicing identification, named Horizon-wise Gene Splicing Identification (H-GSI). The proposed H-GSI follows the horizon-wise identification paradigm and comprises four components: the pre-processing procedure transforming string data into tensors, the sliding window technique handling long sequences, the SeqLab model, and the predictor. In contrast to existing studies that process gene information with a truncated fixed-length sequence, H-GSI employs a horizon-wise identification paradigm in which all positions in a sequence are predicted with only one forward computation, improving accuracy and efficiency. The experiments conducted on the real-world Human dataset show that our proposed H-GSI outperforms SpliceAI and achieves the best accuracy of 97.20\\%. The source code is available from this link.","url_abs":"https://arxiv.org/abs/2406.11900v1","url_pdf":"https://arxiv.org/pdf/2406.11900v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"horizon-wise-learning-paradigm-promotes-gene","repo_url":"https://github.com/wnqn1597/H-GSI","is_official":1,"mentioned_in_paper":0,"mentioned_in_github":0,"framework":"pytorch","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"syntology_url":null,"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}