{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/hetero-modal-variational-encoder-decoder-for","title":"Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation","arxiv_id":"1907.11150","date":"2019-07-25","proceeding":null,"authors":["Reuben Dorent","Samuel Joutard","Marc Modat","Sébastien Ourselin","Tom Vercauteren"],"abstract":"We propose a new deep learning method for tumour segmentation when dealing with missing imaging modalities. Instead of producing one network for each possible subset of observed modalities or using arithmetic operations to combine feature maps, our hetero-modal variational 3D encoder-decoder independently embeds all observed modalities into a shared latent representation. Missing data and tumour segmentation can be then generated from this embedding. In our scenario, the input is a random subset of modalities. We demonstrate that the optimisation problem can be seen as a mixture sampling. In addition to this, we introduce a new network architecture building upon both the 3D U-Net and the Multi-Modal Variational Auto-Encoder (MVAE). Finally, we evaluate our method on BraTS2018 using subsets of the imaging modalities as input. Our model outperforms the current state-of-the-art method for dealing with missing modalities and achieves similar performance to the subset-specific equivalent networks.","url_abs":"https://arxiv.org/abs/1907.11150v1","url_pdf":"https://arxiv.org/pdf/1907.11150v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"hetero-modal-variational-encoder-decoder-for","repo_url":"https://github.com/ReubenDo/U-HVED","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":1,"framework":"tf","reach":null}],"tasks":[{"task_slug":"decoder","task_name":"Decoder"},{"task_slug":"modality-completion","task_name":"Modality completion"},{"task_slug":"segmentation","task_name":"Segmentation"}],"methods":[{"method_slug":"concatenated-skip-connection","method_name":"Concatenated Skip Connection"},{"method_slug":"convolution","method_name":"Convolution"},{"method_slug":"max-pooling","method_name":"Max Pooling"},{"method_slug":"relu","method_name":"ReLU"},{"method_slug":"u-net","method_name":"U-Net"}],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":"https://app.syntology.ai/?focus=1907.11150","mcp":{"get_harvested_code_for_paper":{"arxiv_id":"1907.11150"}},"developers":"https://syntology.ai/developers","read_at":"2026-09-24T18:15:14+00:00","read_at_is":"when the build read Syntology's graph, not when any sample ran","claim":"Per-sample execution status on synthesized fixtures; not a correctness claim about the paper. Samples come from repositories linked to the paper, official or community; repo_kind says which.","repos":[{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/ReubenDo/U-HVED","reach":null}],"summary":{"ran_draft_wrong":1},"by_repo_kind":{},"repo_kind_vocabulary":{"official":"The archive marks this repository official for the paper","named_in_paper":"The archive records that the paper mentions this repository; it is not marked official","listed":"In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper","found_in_text":"Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted","community":"Not in the archive's code links for this paper; a community repository Syntology harvested"},"n_pointer_only_for_licence":1,"samples":[{"code_sha256_prefix":"016ba1b09b3aa192","entry":"find_exclusion","repo":null,"repo_kind":null,"path":null,"file_url":null,"link_basis":"identical_code_first_harvested_elsewhere","language":"python","status":"ran_draft_wrong","verification_level":1,"contract_check":"OUTPUT_MISDECLARED","metamorphic_tier":"deterministic","behaviour_fingerprint":false,"licence":null,"inline_ok":false,"mcp_get_code":{"code_sha256":"016ba1b09b3aa192"}}]},"arxiv_metadata":null,"syntology_extracted_results":null}