{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/comparing-radiologists-gaze-and-saliency-maps","title":"Comparing radiologists' gaze and saliency maps generated by interpretability methods for chest x-rays","arxiv_id":"2112.11716","date":"2021-12-22","proceeding":null,"authors":["Ricardo Bigolin Lanfredi","Ambuj Arora","Trafton Drew","Joyce D. Schroeder","Tolga Tasdizen"],"abstract":"The interpretability of medical image analysis models is considered a key research field. We use a dataset of eye-tracking data from five radiologists to compare the outputs of interpretability methods and the heatmaps representing where radiologists looked. We conduct a class-independent analysis of the saliency maps generated by two methods selected from the literature: Grad-CAM and attention maps from an attention-gated model. For the comparison, we use shuffled metrics, which avoid biases from fixation locations. We achieve scores comparable to an interobserver baseline in one shuffled metric, highlighting the potential of saliency maps from Grad-CAM to mimic a radiologist's attention over an image. We also divide the dataset into subsets to evaluate in which cases similarities are higher.","url_abs":"https://arxiv.org/abs/2112.11716v3","url_pdf":"https://arxiv.org/pdf/2112.11716v3.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"comparing-radiologists-gaze-and-saliency-maps","repo_url":"https://github.com/ricbl/etsaliencymaps","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"pytorch","reach":{"status":"ok","spdx":"MIT"}}],"tasks":[{"task_slug":"medical-image-analysis","task_name":"Medical Image Analysis"}],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"syntology_url":"https://syntology.ai/paper/2112.11716","atlas_url":"https://app.syntology.ai/?focus=2112.11716","mcp":{"get_harvested_code_for_paper":{"arxiv_id":"2112.11716"}},"developers":"https://syntology.ai/developers","read_at":"2026-09-25T09:33:49+00:00","read_at_is":"when the build read Syntology's graph, not when any sample ran","claim":"Per-sample execution status on synthesized fixtures; not a correctness claim about the paper. Samples come from repositories linked to the paper, official or community; repo_kind says which.","repos":[{"provenance":"external:paperswithcode_snapshot_2025-07-28","url":"https://github.com/ricbl/etsaliencymaps","reach":{"status":"ok","spdx":"MIT"}}],"summary":{"ran":10,"unverified":5},"by_repo_kind":{"official":{"samples":15,"ran":10,"repositories":1}},"repo_kind_vocabulary":{"official":"The archive marks this repository official for the paper","named_in_paper":"The archive records that the paper mentions this repository; it is not marked official","listed":"In the archive's code links for this paper, not marked official and not recorded as mentioned in the paper","found_in_text":"Syntology found this repository in the paper's own text; whether it is the authors' implementation is not asserted","community":"Not in the archive's code links for this paper; a community repository Syntology harvested"},"n_pointer_only_for_licence":0,"samples":[{"code_sha256_prefix":"fc8f6600673f7e43","entry":"apply_windowing","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/get_segmentation_baseline.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/get_segmentation_baseline.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"fc8f6600673f7e43"}},{"code_sha256_prefix":"6015f5e0532cebea","entry":"create_heatmap","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/generate_heatmap_eyetracking.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/generate_heatmap_eyetracking.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"6015f5e0532cebea"}},{"code_sha256_prefix":"1ed2739588f5bbbe","entry":"find_nearest","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/get_segmentation_baseline.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/get_segmentation_baseline.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":true,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"1ed2739588f5bbbe"}},{"code_sha256_prefix":"8a4f89cc27017275","entry":"get_32_size","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/dataset.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/dataset.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":true,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"8a4f89cc27017275"}},{"code_sha256_prefix":"a0c2734a9e0a5ea7","entry":"get_auc","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/dataset.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/dataset.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"a0c2734a9e0a5ea7"}},{"code_sha256_prefix":"8699ea53bda34972","entry":"get_cases","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/compare_heatmaps.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/compare_heatmaps.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"8699ea53bda34972"}},{"code_sha256_prefix":"54967f11ccbbb5ab","entry":"get_gaussian","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/generate_heatmap_eyetracking.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/generate_heatmap_eyetracking.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"54967f11ccbbb5ab"}},{"code_sha256_prefix":"2ba449d77622a6dd","entry":"smooth_auc","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/compare_heatmaps.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/compare_heatmaps.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"2ba449d77622a6dd"}},{"code_sha256_prefix":"c07a0a6f9b9f548e","entry":"smooth_shuffled_auc","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/compare_heatmaps.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/compare_heatmaps.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"c07a0a6f9b9f548e"}},{"code_sha256_prefix":"c0c3f55297e9cd25","entry":"sorter","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/get_center_bias.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/get_center_bias.py","link_basis":"harvester_set","language":"python","status":"ran","verification_level":1,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"c0c3f55297e9cd25"}},{"code_sha256_prefix":"d0df7bad46f570f0","entry":"crop_or_pad_to","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/generate_heatmap_model.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/generate_heatmap_model.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"d0df7bad46f570f0"}},{"code_sha256_prefix":"c49a60e9b322c63c","entry":"getImgList","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/mimic_generate_df.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/mimic_generate_df.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"c49a60e9b322c63c"}},{"code_sha256_prefix":"df6a7d611455250b","entry":"get_filepaths","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/generate_heatmap_model.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/generate_heatmap_model.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"df6a7d611455250b"}},{"code_sha256_prefix":"5f0de177617b6965","entry":"get_model","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/get_model.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/get_model.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"5f0de177617b6965"}},{"code_sha256_prefix":"dd52fd91fdec8583","entry":"pre_process_path","repo":"ricbl/etsaliencymaps","repo_kind":"official","path":"src/dataset.py","file_url":"https://github.com/ricbl/etsaliencymaps/blob/HEAD/src/dataset.py","link_basis":"harvester_set","language":"python","status":"unverified","verification_level":0,"contract_check":null,"metamorphic_tier":null,"behaviour_fingerprint":false,"licence":"MIT","inline_ok":true,"mcp_get_code":{"code_sha256":"dd52fd91fdec8583"}}]},"arxiv_metadata":null,"syntology_extracted_results":null}