{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/cellulyzer-automated-analysis-and-interactive","title":"Cellulyzer - Automated analysis and interactive visualization/simulation of select cellular processes","arxiv_id":"1703.02611","date":"2017-03-06","proceeding":null,"authors":["Aliakbar Jafarpour","Holger Lorenz"],"abstract":"Here we report on a set of programs developed at the ZMBH Bio-Imaging\nFacility for tracking real-life images of cellular processes. These programs\nperform 1) automated tracking; 2) quantitative and comparative track analyses\nof different images in different groups; 3) different interactive visualization\nschemes; and 4) interactive realistic simulation of different cellular\nprocesses for validation and optimal problem-specific adjustment of image\nacquisition parameters (tradeoff between speed, resolution, and quality with\nfeedback from the very final results). The collection of programs is primarily\ndeveloped for the common bio-image analysis software ImageJ (as a single Java\nPlugin). Some programs are also available in other languages (C++ and\nJavascript) and may be run simply with a web-browser; even on a low-end Tablet\nor Smartphone. The programs are available at\nhttps://github.com/nurlicht/CellulyzerDemo","url_abs":"http://arxiv.org/abs/1703.02611v1","url_pdf":"http://arxiv.org/pdf/1703.02611v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"cellulyzer-automated-analysis-and-interactive","repo_url":"https://github.com/nurlicht/CellulyzerDemo","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":1,"framework":"none","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}